Factsheet for VIT_01s0010g02600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44049	Soybean	nucleus	67.52	70.42
CDY25624	Canola	cytosol	20.48	67.33
Solyc01g068330.2.1	Tomato	nucleus	65.58	65.9
PGSC0003DMT400046254	Potato	cytosol	65.58	65.82
GSMUA_Achr4P03560_001	Banana	mitochondrion	61.58	64.96
Zm00001d009592_P001	Maize	cytosol	20.0	62.98
PGSC0003DMT400015455	Potato	mitochondrion	57.33	61.99
Zm00001d035913_P002	Maize	cytosol, mitochondrion	53.33	60.03
Zm00001d045566_P001	Maize	cytosol, mitochondrion	55.52	59.64
EER87717	Sorghum	cytosol	55.76	59.35
Os06t0109400-01	Rice	cytosol	55.39	59.35
CDX74308	Canola	mitochondrion	48.61	56.8
TraesCS7A01G025800.1	Wheat	mitochondrion	53.7	56.43
TraesCS4A01G463300.1	Wheat	mitochondrion	53.58	56.31
TraesCS7D01G023600.1	Wheat	mitochondrion	53.21	55.92
TraesCS5D01G081900.1	Wheat	mitochondrion	50.06	55.59
Zm00001d027244_P001	Maize	cytosol	24.61	55.46
Zm00001d022096_P002	Maize	mitochondrion	50.3	54.82
HORVU7Hr1G002880.2	Barley	plastid	52.85	54.43
TraesCS3B01G487900.1	Wheat	mitochondrion	48.85	54.09
CDX84794	Canola	cytosol	48.12	53.43
Zm00001d002717_P001	Maize	mitochondrion	26.42	53.43
CDX91939	Canola	cytosol, mitochondrion	50.3	53.41
TraesCS3A01G450800.1	Wheat	mitochondrion	48.24	53.35
Bra000999.1-P	Field mustard	cytosol, mitochondrion	53.82	53.3
AT3G01610.2	Thale cress	nucleus	53.58	53.25
TraesCS3D01G443600.1	Wheat	mitochondrion	48.24	53.21
Bra022833.1-P	Field mustard	cytosol	47.88	53.16
CDY23949	Canola	cytosol	45.94	52.28
CDY45794	Canola	nucleus	49.45	51.19
Zm00001d053999_P001	Maize	cytosol	24.85	49.88
CDX89698	Canola	endoplasmic reticulum	41.45	49.21
VIT_06s0061g00340.t01	Wine grape	cytosol	30.79	33.2
VIT_08s0040g01480.t01	Wine grape	cytosol	31.15	31.89
VIT_17s0000g08890.t01	Wine grape	cytosol	30.91	31.33
VIT_18s0001g13090.t01	Wine grape	cytosol	14.67	30.4
VIT_03s0038g04350.t01	Wine grape	cytosol	14.67	30.33
VIT_09s0002g05800.t01	Wine grape	cytosol	14.42	28.54
VIT_06s0004g08220.t01	Wine grape	cytosol	14.3	28.23
VIT_07s0005g05160.t01	Wine grape	cytosol	15.15	28.09
VIT_09s0002g00170.t01	Wine grape	cytosol	14.42	27.93
VIT_04s0008g04690.t01	Wine grape	cytosol	14.06	27.62
VIT_11s0016g00230.t01	Wine grape	cytosol	13.94	27.06
VIT_14s0060g02260.t01	Wine grape	cytosol	12.61	25.68
VIT_05s0020g01180.t01	Wine grape	cytosol	13.09	25.53
VIT_08s0040g00910.t01	Wine grape	cytosol	30.18	23.51
VIT_07s0104g01610.t01	Wine grape	cytosol	23.64	20.79
VIT_00s0125g00170.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	23.64	17.2

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100261441	wikigene:100261441	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:CCB51244	ProteinID:CCB51244.1	UniProt:F6HG51	EMBL:FN595754
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015074	GO:GO:0016020	GO:GO:0016192	EntrezGene:LOC100261441	wikigene:LOC100261441
InterPro:NVL2_nucleolin-bd	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF16725	ScanProsite:PS00674	PANTHER:PTHR23077
PANTHER:PTHR23077:SF55	SMART:SM00382	SUPFAM:SSF52540	TIGR:TC55843	UniParc:UPI0001982B7D	ArrayExpress:VIT_01s0010g02600
EnsemblPlantsGene:VIT_01s0010g02600	EnsemblPlants:VIT_01s0010g02600.t01	unigene:Vvi.10737	RefSeq:XP_002266185	RefSeq:XP_002266185.1	SEG:seg

Description

No Description!

Coordinates

chr1:+:19653020..19663790

Molecular Weight (calculated)

92085.6 Da

IEP (calculated)

6.416

GRAVY (calculated)

-0.534

Length

825 amino acids

Sequence
(BLAST)

001: MIGFDRVLVH RLQSCKDNYQ TLDAIINHLC RKYPEYSRKK RQPFTRLVQQ ALESLQQPHR STKKKKNEPL TSNLDDDNQE FSDSARTRKR PKKINESEER
101: LVRRELEHYR RMQRDQERPS TSSDSDSDSD SNSSSSSSCD SEDGAVSTSE NADAIYEEKV EPECDLMKEM MRATYAKSAS KNVESKNENP RLIEDKNIEL
201: EVGDKQKSKI GMVEGGGVGK GLGKGSKKEV KGSVSTGVEV SGKDGPMFSD LGGMKSVVED LKMEVIVPLY YPELPRWLGV RPMAGILLHG PPGCGKTKLA
301: HAIANETKVP FYKISATEVV SGVSGASEEN IRELFSKAYR TAPSIVFIDE IDAIASKREN LNREMERRIV TQLMTCMDES NRLVQPADGD KESEISHHKP
401: GYVLVIGATN RPDAVDPALR RPGRFDREIA LGVPDESARA DILSVITRNL RLEGSFDLAK LARSTPGFVG ADLAALANKA GNLAMKRIID RRKFELSREL
501: TDEEHIEDWW RQPWLPEEME KLSITMADFE EAAKMVQPSS RREGFSTIPN VRWEDVGGLD FLRQEFDRYI VRRIKYPEDY EEFGVDLETG FLLYGPPGCG
601: KTLIAKAVAN EAGANFIHIK GPELLNKYVG ESELAVRTLF SRARTCSPCI LFFDEVDALT TKRGKEGGWV VERLLNQLLI ELDGADQRRG VFVIGATNRP
701: EVMDRAVLRP GRFGKLLYVP LPSPDERGLI LKALARKKPI DASVDLIAIG QKEACNNLSG ADLSALMNEA AMAALEEKLA DCSSGAISWT INAKHFDQAL
801: GKISPSVSNK QKHFYQVLSE SFKAE

Best Arabidopsis Sequence Match ( AT3G01610.2 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.