CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84794	Canola	cytosol	84.82	90.98
CDY23949	Canola	cytosol	80.05	88.0
CDY25624	Canola	cytosol	26.1	82.87
CDX74308	Canola	mitochondrion	65.62	74.08
CDX91939	Canola	cytosol, mitochondrion	70.89	72.72
AT3G01610.2	Thale cress	nucleus	67.25	64.58
CDX89698	Canola	endoplasmic reticulum	53.07	60.86
Zm00001d009592_P001	Maize	cytosol	18.19	55.34
VIT_01s0010g02600.t01	Wine grape	cytosol	51.19	49.45
Zm00001d035913_P002	Maize	cytosol, mitochondrion	45.29	49.25
GSMUA_Achr4P03560_001	Banana	mitochondrion	48.06	48.98
PGSC0003DMT400015455	Potato	mitochondrion	46.8	48.89
EER87717	Sorghum	cytosol	47.18	48.52
Solyc01g068330.2.1	Tomato	nucleus	49.69	48.23
PGSC0003DMT400046254	Potato	cytosol	49.56	48.05
Os06t0109400-01	Rice	cytosol	46.42	48.05
Zm00001d045566_P001	Maize	cytosol, mitochondrion	46.3	48.05
Zm00001d022096_P002	Maize	mitochondrion	45.42	47.82
TraesCS5D01G081900.1	Wheat	mitochondrion	43.91	47.11
TraesCS7D01G023600.1	Wheat	mitochondrion	46.17	46.88
TraesCS4A01G463300.1	Wheat	mitochondrion	46.17	46.88
TraesCS7A01G025800.1	Wheat	mitochondrion	45.92	46.62
TraesCS3D01G443600.1	Wheat	mitochondrion	43.16	45.99
TraesCS3A01G450800.1	Wheat	mitochondrion	42.91	45.84
TraesCS3B01G487900.1	Wheat	mitochondrion	42.66	45.64
Zm00001d027244_P001	Maize	cytosol	20.2	43.99
HORVU7Hr1G002880.2	Barley	plastid	43.79	43.57
Zm00001d002717_P001	Maize	mitochondrion	22.21	43.38
KRH10420	Soybean	mitochondrion	26.22	42.22
Zm00001d053999_P001	Maize	cytosol	20.58	39.9
CDY20370	Canola	cytosol	12.67	37.55
CDY39032	Canola	cytosol	10.92	34.66
CDY04161	Canola	cytosol	24.72	32.67
CDY41581	Canola	cytosol	32.5	32.05
CDY54618	Canola	cytosol	32.5	32.05
CDY07941	Canola	cytosol	32.5	32.01
CDX73996	Canola	cytosol	32.5	32.01
CDY41316	Canola	cytosol, extracellular	32.5	31.98
CDY22207	Canola	cytosol	32.5	31.98
CDY11249	Canola	cytosol	31.87	31.83
CDY22373	Canola	cytosol	15.81	31.58
CDY25226	Canola	cytosol	15.81	31.58
CDX71534	Canola	cytosol	15.81	31.58
CDY13308	Canola	cytosol	32.0	31.48
CDX80862	Canola	cytosol, plastid	31.87	31.4
CDY02428	Canola	cytosol, extracellular	15.68	31.33
CDX73571	Canola	cytosol	28.36	30.42
CDX78154	Canola	cytosol	28.23	30.24
CDY39033	Canola	cytosol	14.81	29.06
CDX67563	Canola	cytosol	31.74	28.78
CDY58566	Canola	cytosol	14.3	28.22
CDY20470	Canola	cytosol, plasma membrane	15.06	28.17
CDY36602	Canola	cytosol	15.06	28.17
CDY24076	Canola	cytosol	15.06	28.17
CDY30665	Canola	cytosol	15.06	28.17
CDX74842	Canola	cytosol	14.55	28.16
CDY32995	Canola	cytosol, extracellular	14.18	27.97
CDX88666	Canola	cytosol	14.18	27.97
CDY02806	Canola	cytosol	14.18	27.97
CDY43865	Canola	cytosol	14.18	27.97
CDY32714	Canola	cytosol	14.18	27.97
CDY02494	Canola	cytosol	14.93	27.93
CDY25685	Canola	cytosol	14.81	27.7
CDY35832	Canola	cytosol	14.55	27.68
CDX70903	Canola	cytosol	14.43	27.64
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	24.72	27.51
CDX92914	Canola	cytosol, extracellular	15.06	27.09
CDY35245	Canola	cytosol	15.06	27.09
CDY06847	Canola	cytosol	15.06	27.09
CDX97472	Canola	cytosol	15.06	26.97
CDY14224	Canola	cytosol	15.06	26.97
CDY20371	Canola	cytosol, plastid	14.43	26.14
CDY08201	Canola	cytosol	11.29	25.35
CDY27761	Canola	cytosol	13.05	24.53
CDX74142	Canola	cytosol	13.05	24.53
CDY05176	Canola	cytosol	13.05	24.53
CDY18782	Canola	cytosol	13.05	24.53
CDY18801	Canola	cytosol	13.05	24.53
CDY40714	Canola	cytosol	13.05	24.53
CDY30663	Canola	cytosol	13.17	24.31
CDX89923	Canola	cytosol	23.21	24.21
CDX72118	Canola	plastid	28.23	23.83
CDY59958	Canola	cytosol	10.66	23.35
CDY56774	Canola	plastid	28.36	22.2
CDY37450	Canola	mitochondrion	25.09	21.62
CDY32490	Canola	mitochondrion	24.97	21.47
CDX88865	Canola	cytosol, extracellular	14.55	18.44
CDY02982	Canola	cytosol	24.84	16.79
CDX69950	Canola	cytosol	22.71	16.58
CDY18139	Canola	extracellular, vacuole	6.27	16.5
CDY62119	Canola	cytosol	22.58	16.48
CDY42324	Canola	cytosol, extracellular	14.68	16.32
CDY44958	Canola	cytosol, plasma membrane	14.68	16.23
CDY69655	Canola	cytosol, nucleus	0.38	1.32

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078I8Q9	UniProt:A0A078I8Q9	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlants:CDY45794	ProteinID:CDY45794	ProteinID:CDY45794.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00082725001	InterPro:P-loop_NTPase	PFAM:PF00004
PRINTS:PR00830	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF55	SMART:SM00382	SUPFAM:SSF52540
UniParc:UPI0004EE294B	SEG:seg	:	:	:	:

Description

BnaC03g16170DBnaC03g16170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8Q9]

Coordinates

chrLK032637:-:18113..21313

Molecular Weight (calculated)

87525.8 Da

IEP (calculated)

8.813

GRAVY (calculated)

-0.560

Length

797 amino acids

Sequence
(BLAST)

001: MGRRDKSRRD LSRAMDWCGK DLSTAEEIVD ALRSRYGKYK RMSRQALVLN VRNVLDARNN NKKRVKEDEE DDDSDEGAGG GKMKKQRRLD EQSHVERRNK
101: EKSVSSSSSS SEDSGGHIST SEDAKVSPRI DLTSDCLRGS YAKMNSSTKL APPKQRRQGA GGGKMKKQRR LDVKEKSVSS SSSSSSEDSG GHISKLAPPG
201: KVGPTFKDFG GIKKVLDELD QYILSPLLNP PLFGKIGAKP PSGILFHGPP GCGKTRLANA VANEAGVPFY QISATQLLSG VSGASEENIR RLFSKAYRTA
301: PSIVFIDEID AIGSKRENQQ RETEKRIVTQ LLTCMDGPPP GGGEDTTAAA GYVVVIGATN TPDALDPALR RGRRFGREIA LTPPDVHARA EILSLVAQRL
401: RLEGSFDMKR IARLTPGFVG ADLEELADMA ASLCVKRIMD SRKLQLSGDS DDGDDRSWLR QPWSDEDLDK LFVTMSDFED AVKLVKGSLT REGFSTVPDV
501: SWDDVGGLGH LRSELNNYIV RPIKYPDMYE KFGKTLETGF LLYGPPGCGK TLVAKAVANE AGANFIHIKG PELLNKYVGE SERAIRTLFQ RARTSSPCVI
601: FFDEVDALTG RRGREGDHLV VGGLLNQFLT ELHGGDRRDV YVIGATNRLD VIDPAFLRPG RFGNLVYVPL PNADDRVSIL KSIANKRPLD PSVDLDAIAN
701: KYCEGFSGAD LANLMDKAIH VAVKEKFQSI ESSEDGDMDF SDCTIKMTHF KQALSSVTPS VSKQQIKHYE EQRKKFQSST GRNNMDKINV GPSFAHE

Best Arabidopsis Sequence Match ( AT3G01610.2 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.