CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78154	Canola	cytosol	96.37	96.24
KRG99061	Soybean	cytosol	23.42	87.0
KRG94277	Soybean	cytosol	23.82	85.51
CDY13308	Canola	cytosol	92.19	84.57
CDY11249	Canola	cytosol	88.16	82.08
CDY22207	Canola	cytosol	88.43	81.11
CDY41316	Canola	cytosol, extracellular	88.43	81.11
CDX73996	Canola	cytosol	88.29	81.09
CDY07941	Canola	cytosol	88.29	81.09
CDY54618	Canola	cytosol	88.16	81.06
Zm00001d048409_P001	Maize	cytosol	87.48	80.85
CDY41581	Canola	cytosol	87.89	80.82
Zm00001d027707_P001	Maize	cytosol, plasma membrane	87.35	80.42
CDX80862	Canola	cytosol, plastid	87.21	80.1
Zm00001d032859_P006	Maize	plasma membrane	87.21	80.0
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	87.08	79.98
Zm00001d014124_P001	Maize	cytosol, plasma membrane	87.21	79.9
TraesCSU01G001000.1	Wheat	cytosol	83.58	77.33
TraesCS3A01G144500.1	Wheat	cytosol	55.05	76.74
CDX67563	Canola	cytosol	90.31	76.34
TraesCS1D01G194500.1	Wheat	cytosol	27.19	76.23
TraesCS3A01G145000.1	Wheat	cytosol	71.2	76.01
TraesCS3B01G154400.1	Wheat	cytosol	79.14	74.62
TraesCS1A01G248500.1	Wheat	cytosol	59.89	74.54
HORVU0Hr1G006340.1	Barley	cytosol	78.6	74.11
TraesCS5B01G323100.1	Wheat	cytosol	57.87	74.01
TraesCS3B01G171300.1	Wheat	cytosol	72.54	73.94
TraesCS1B01G419200.1	Wheat	cytosol	78.47	73.89
TraesCS3A01G145100.1	Wheat	cytosol	78.47	73.89
TraesCS3B01G171200.1	Wheat	cytosol	78.2	73.73
TraesCS3B01G172000.1	Wheat	cytosol	77.79	73.72
EER95525	Sorghum	cytosol	77.39	73.72
TraesCS1B01G259200.1	Wheat	cytosol	78.2	73.64
KXG40206	Sorghum	cytosol	77.25	73.4
TraesCS3B01G172100.1	Wheat	cytosol	77.79	73.16
TraesCS3B01G171400.1	Wheat	cytosol	71.47	73.04
HORVU3Hr1G029450.1	Barley	cytosol	78.6	72.28
HORVU3Hr1G029440.1	Barley	cytosol	78.6	71.74
TraesCS1D01G340100.1	Wheat	cytosol	23.55	68.36
TraesCS3D01G153300.1	Wheat	cytosol	20.59	68.3
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	17.9	68.21
KRH45638	Soybean	cytosol	26.78	61.99
GSMUA_Achr5P13290_001	Banana	cytosol	17.36	58.64
Zm00001d032117_P001	Maize	cytosol	23.15	53.75
CDY25624	Canola	cytosol	12.38	36.65
CDY04161	Canola	cytosol	26.38	32.5
CDX74308	Canola	mitochondrion	29.74	31.3
CDX84794	Canola	cytosol	30.28	30.28
CDY23949	Canola	cytosol	29.48	30.21
CDX91939	Canola	cytosol, mitochondrion	30.28	28.96
CDY20370	Canola	cytosol	10.36	28.62
CDY45794	Canola	nucleus	30.42	28.36
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.65	27.65
CDX74842	Canola	cytosol	14.94	26.94
CDX71534	Canola	cytosol	14.4	26.82
CDY02428	Canola	cytosol, extracellular	14.4	26.82
CDY22373	Canola	cytosol	14.4	26.82
CDY25226	Canola	cytosol	14.4	26.82
CDY24076	Canola	cytosol	15.21	26.53
CDY30665	Canola	cytosol	15.21	26.53
CDY36602	Canola	cytosol	15.21	26.53
CDY39032	Canola	cytosol	8.88	26.29
CDY02494	Canola	cytosol	15.07	26.29
CDY25685	Canola	cytosol	15.07	26.29
CDY20470	Canola	cytosol, plasma membrane	14.94	26.06
CDX89698	Canola	endoplasmic reticulum	23.69	25.32
CDY05176	Canola	cytosol	14.27	25.0
CDY18782	Canola	cytosol	14.27	25.0
CDY18801	Canola	cytosol	14.27	25.0
CDY27761	Canola	cytosol	14.27	25.0
CDX72118	Canola	plastid	31.49	24.79
CDX74142	Canola	cytosol	14.13	24.76
CDY40714	Canola	cytosol	14.13	24.76
CDY02806	Canola	cytosol	13.46	24.75
CDX88666	Canola	cytosol	13.32	24.5
CDY32714	Canola	cytosol	13.32	24.5
CDY32995	Canola	cytosol, extracellular	13.32	24.5
CDY43865	Canola	cytosol	13.32	24.5
CDY58566	Canola	cytosol	13.32	24.5
CDY06847	Canola	cytosol	14.13	23.7
CDX92914	Canola	cytosol, extracellular	14.0	23.48
CDY35245	Canola	cytosol	14.0	23.48
CDY39033	Canola	cytosol	12.79	23.4
CDY35832	Canola	cytosol	13.19	23.39
CDX70903	Canola	cytosol	13.06	23.32
CDX97472	Canola	cytosol	13.86	23.15
CDY14224	Canola	cytosol	13.86	23.15
CDY08201	Canola	cytosol	10.9	22.82
CDY56774	Canola	plastid	31.22	22.79
CDY30663	Canola	cytosol	13.19	22.69
CDX89923	Canola	cytosol	22.88	22.25
CDY20371	Canola	cytosol, plastid	12.65	21.36
CDY59958	Canola	cytosol	10.23	20.88
CDY32490	Canola	mitochondrion	25.57	20.5
CDY37450	Canola	mitochondrion	25.44	20.43
CDY02982	Canola	cytosol	27.86	17.56
CDY18139	Canola	extracellular, vacuole	6.86	16.83
CDX88865	Canola	cytosol, extracellular	14.0	16.53
CDX69950	Canola	cytosol	23.96	16.3
CDY62119	Canola	cytosol	23.96	16.3
CDY42324	Canola	cytosol, extracellular	14.0	14.5
CDY44958	Canola	cytosol, plasma membrane	14.0	14.42
CDY69655	Canola	cytosol, nucleus	1.08	3.52

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	GO:A0A078C946
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
EnsemblPlants:CDX73571	ProteinID:CDX73571	ProteinID:CDX73571.1	InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00109120001	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359
PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072
SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	UniParc:UPI0004EE5F04	SEG:seg

Description

BnaC08g24320D

Coordinates

chrLK031799:-:1314788..1318426

Molecular Weight (calculated)

82299.0 Da

IEP (calculated)

4.938

GRAVY (calculated)

-0.373

Length

743 amino acids

Sequence
(BLAST)

001: MANQADSSDS KGTKKDFSTA ILERKKAANR LVVDEAINDD NSIVSLHPDT MEKLQLFRGE VVLIKGKKRK DTVCIALADD TCAEPKIRMN KVVRSNLRVR
101: LGDVISLHQC PDVKYGNRVH VLPIDDTIEG VTGNIFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSIEFKV IETDPAEYCI VAPDTDIFCE GEPIKREDEE
201: RHPQLFKSIG VKPPKGILLY GPPGTGKTLL ARAVANETGA FFLCINGPEI MSKMAGESES NLRKAFKEAE KNAPSIIFID EIDSIAPKRD KTNGEVERRI
301: VSQLLTLMDG LKARAHVIVM GATNRPNSID SALRRFGRFD REIDIGVPDE IGRLEVLRIH TKNMKLAEDV DLERASKDTH GYVGADLAAL CTEAALQCIR
401: GKMDVIDIED EEIDAEILNS MAVTNEHYLT ALGNSNPSAL RETVVEVPNV SWVDIGGLEN VKRELQETVQ YPVEHPDKFE KFGMSPSKGV LFYGPPGCGK
501: TLLAKAIANE CQANFISIKG PELLTMWFGE SEANVREIFD KARQSAPCVL FFDELDSIAT QRGNSVGDAG GAADRVWMLI YIPLPDEESR YQIFKSCLRK
601: SPVAKDVDLR ALAKYTRGFS GADITEICQR SCKYAIRENI EKDIEKERKR AEAPEAMEED EEEIAEIKAG HFEESMKYAR RSVSDADIRK YQAFAQTLQQ
701: SRGIGSEFRF PEATGTGATA TTAGGADPFA NAGGVAEDDD LYS

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.