Factsheet for TraesCS1D01G194500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G153300.1	Wheat	cytosol	72.45	85.71
TraesCS1D01G340100.1	Wheat	cytosol	79.25	82.03
GSMUA_Achr5P13290_001	Banana	cytosol	60.75	73.18
KRG99061	Soybean	cytosol	26.42	35.0
KRG94277	Soybean	cytosol	25.66	32.85
TraesCS1D01G223800.1	Wheat	cytosol	96.6	32.0
TraesCS1D01G253100.1	Wheat	cytosol	95.85	31.75
TraesCS4D01G267800.1	Wheat	cytosol	93.96	30.63
TraesCS4D01G267600.2	Wheat	cytosol	94.34	30.56
TraesCS3D01G154000.1	Wheat	cytosol	87.92	29.57
TraesCS1D01G248000.1	Wheat	cytosol	86.79	29.15
TraesCS1D01G399100.1	Wheat	cytosol	86.42	29.02
TraesCS3D01G153900.1	Wheat	cytosol	86.04	28.93
CDX73571	Canola	cytosol	76.23	27.19
CDX78154	Canola	cytosol	76.23	27.15
TraesCS6D01G360700.1	Wheat	cytosol	69.06	24.86
TraesCS3D01G153800.1	Wheat	cytosol	63.02	24.56
TraesCS6D01G149500.1	Wheat	cytosol	33.21	24.44
KRH45638	Soybean	cytosol	27.92	23.05
TraesCS7D01G375500.1	Wheat	cytosol	33.21	22.0
TraesCS7D01G532000.1	Wheat	cytosol	32.83	21.86
TraesCS2D01G083900.1	Wheat	golgi	33.96	21.69
TraesCS2D01G476000.1	Wheat	cytosol	33.96	21.58
TraesCS6D01G326400.1	Wheat	cytosol	33.96	21.13
TraesCS7D01G157200.1	Wheat	cytosol	33.58	20.89
TraesCS6D01G166700.1	Wheat	cytosol, golgi	31.7	20.1
TraesCS7D01G350300.1	Wheat	cytosol	32.08	20.09
TraesCS3D01G417000.1	Wheat	cytosol	32.08	19.59
TraesCS7D01G134800.1	Wheat	cytosol	31.7	19.58
TraesCS4D01G190600.1	Wheat	cytosol, golgi	33.21	19.56
TraesCS2D01G087900.1	Wheat	cytosol, golgi	32.45	19.15
TraesCS2D01G471200.1	Wheat	cytosol	32.08	18.76
TraesCS2D01G353100.1	Wheat	cytosol	38.49	17.96
TraesCS3D01G443600.1	Wheat	mitochondrion	40.75	14.44
TraesCS5D01G081900.1	Wheat	mitochondrion	40.0	14.27
TraesCS7D01G023600.1	Wheat	mitochondrion	38.11	12.87
TraesCS2D01G458300.3	Wheat	mitochondrion	42.64	12.11
TraesCS1D01G073600.1	Wheat	cytosol, plastid	40.38	10.65
TraesCS4D01G105500.2	Wheat	cytosol, plastid	40.38	10.64
TraesCS5D01G306600.2	Wheat	mitochondrion	37.36	9.05
TraesCS7D01G277100.1	Wheat	cytosol, peroxisome, plastid	36.23	8.81

Protein Annotations

EnsemblPlants:TraesCS1D01G194500.1	EnsemblPlantsGene:TraesCS1D01G194500	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase
InterPro:Vps4_C	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674
SEG:seg	SMART:SM00382	SUPFAM:SSF52540	TIGR:cd00009	MapMan:35.1	:

Description

No Description!

Coordinates

chr1D:+:271820014..271820811

Molecular Weight (calculated)

29506.2 Da

IEP (calculated)

4.985

GRAVY (calculated)

-0.398

Length

265 amino acids

Sequence
(BLAST)

001: MSPSKGVMFY GPPGCGKTLL AKAIANECQA NFISIKGPEL LPMWFGESEA NVREIFDKAR GSAPCVLFFD ELDSVATQRG NSVGDAGGAA DRVLNQLLTE
101: MDGMNAKKIV FIIGATNRPD IIDPALLRPG RLDQLIYIPL PDVESRHQIF RACLRKSPVA KDVDLNALAK YTQGFSGADI TEICQRACKY AIRENIEKDM
201: EKERRQKENP EAMEEDEVDE VAEIKAAHFE ESMRYARRSV SDADIRKYQA FAQTLQQSRG FGSEF

Best Arabidopsis Sequence Match ( AT1G03000.1 )
(BLAST)

001: MVERRNPLVL SSTRSTLRSV LNSSQPSSAD GDRVLNKDGD LLRGNARLSA GILRWRKDGE NVSDAKLDSL DDSALVGLST QLLKRLSINS GSLVVVKNIE
101: IGIQRVAQVV VLDPPKTTLE DASLTQVPVS DSLHTMLVFP TYDLMGQQLL DQEVAYLSPM LAFNLSLHIS CLKSLVHRGN GVLEKYFEAK CDEEFIGKSA
201: EDGSKIGLDL EPVSQVPGYA SHLRVSFVKI PECGTIPSLK VNSSFEAEER QGLIDSALQK YFGTDRQLSR GDIFRIYIDW NCGSSICNPC SQRLCSESDD
301: YIYFKVIAME PSNERFLRVN HSQTALVLGG TVSSGLPPDL LVYRSKVPMP LQEETVNILA SVLSPPLCPS ALASKLRVAV LLHGIPGCGK RTVVKYVARR
401: LGLHVVEFSC HSLLASSERK TSTALAQTFN MARRYSPTIL LLRHFDVFKN LGSQDGSLGD RVGVSFEIAS VIRELTEPVS NGDSSMEEKS NSNFSENEVG
501: KFRGHQVLLI ASAESTEGIS PTIRRCFSHE IRMGSLNDEQ RSEMLSQSLQ GVSQFLNISS DEFMKGLVGQ TSGFLPRDLQ ALVADAGANL YISQESETKK
601: INSLSDDLHG VDIHQASQID NSTEKLTAKE DFTKALDRSK KRNASALGAP KVPNVKWDDV GGLEDVKTSI LDTVQLPLLH KDLFSSGLRK RSGVLLYGPP
701: GTGKTLLAKA VATECSLNFL SVKGPELINM YIGESEKNVR DIFEKARSAR PCVIFFDELD SLAPARGASG DSGGVMDRVV SQMLAEIDGL SDSSQDLFII
801: GASNRPDLID PALLRPGRFD KLLYVGVNAD ASYRERVLKA LTRKFKLSED VSLYSVAKKC PSTFTGADMY ALCADAWFQA AKRKVSKSDS GDMPTEEDDP
901: DSVVVEYVDF IKAMDQLSPS LSITELKKYE MLRDQFQGRS S

Arabidopsis Description

PEX6Peroxisome biogenesis protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.