Factsheet for TraesCS6D01G360700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G323100.1	Wheat	cytosol	68.34	86.57
TraesCS3D01G153800.1	Wheat	cytosol	79.62	86.18
TraesCS1D01G248000.1	Wheat	cytosol	90.62	84.54
TraesCS1D01G399100.1	Wheat	cytosol	90.49	84.41
HORVU0Hr1G006340.1	Barley	cytosol	90.35	84.39
TraesCS3D01G154000.1	Wheat	cytosol	89.81	83.88
TraesCS3D01G153900.1	Wheat	cytosol	89.13	83.25
HORVU3Hr1G029450.1	Barley	cytosol	90.35	82.3
HORVU3Hr1G029440.1	Barley	cytosol	90.35	81.7
EER95525	Sorghum	cytosol	80.3	75.77
KXG40206	Sorghum	cytosol	80.16	75.45
TraesCS1D01G223800.1	Wheat	cytosol	79.62	73.25
TraesCS4D01G267800.1	Wheat	cytosol	80.84	73.19
TraesCS4D01G267600.2	Wheat	cytosol	81.11	72.98
TraesCS1D01G253100.1	Wheat	cytosol	79.08	72.75
TraesCS1D01G340100.1	Wheat	cytosol	24.86	71.48
TraesCS3D01G153300.1	Wheat	cytosol	21.6	70.98
TraesCS1D01G194500.1	Wheat	cytosol	24.86	69.06
GSMUA_Achr3P00250_001	Banana	cytosol	13.32	50.0
TraesCS2D01G353100.1	Wheat	cytosol	29.21	37.85
TraesCS5D01G081900.1	Wheat	mitochondrion	31.66	31.36
TraesCS3D01G443600.1	Wheat	mitochondrion	31.11	30.61
TraesCS7D01G023600.1	Wheat	mitochondrion	31.39	29.43
TraesCS6D01G149500.1	Wheat	cytosol	14.27	29.17
TraesCS7D01G375500.1	Wheat	cytosol	15.49	28.5
TraesCS7D01G157200.1	Wheat	cytosol	16.17	27.93
TraesCS7D01G532000.1	Wheat	cytosol	15.08	27.89
TraesCS6D01G326400.1	Wheat	cytosol	15.9	27.46
TraesCS2D01G476000.1	Wheat	cytosol	14.95	26.38
TraesCS2D01G083900.1	Wheat	golgi	14.81	26.27
TraesCS3D01G417000.1	Wheat	cytosol	14.54	24.65
TraesCS6D01G166700.1	Wheat	cytosol, golgi	13.59	23.92
TraesCS2D01G471200.1	Wheat	cytosol	14.67	23.84
TraesCS7D01G134800.1	Wheat	cytosol	13.86	23.78
TraesCS4D01G105500.2	Wheat	cytosol, plastid	32.47	23.76
TraesCS7D01G350300.1	Wheat	cytosol	13.59	23.64
TraesCS1D01G073600.1	Wheat	cytosol, plastid	32.07	23.48
TraesCS2D01G087900.1	Wheat	cytosol, golgi	13.99	22.94
TraesCS4D01G190600.1	Wheat	cytosol, golgi	13.99	22.89
TraesCS2D01G458300.3	Wheat	mitochondrion	27.04	21.33
TraesCS5D01G306600.2	Wheat	mitochondrion	22.42	15.08
TraesCS7D01G277100.1	Wheat	cytosol, peroxisome, plastid	22.01	14.86

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02359	PFAM:PF02933	PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122
SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585
EnsemblPlantsGene:TraesCS6D01G360700	EnsemblPlants:TraesCS6D01G360700.1	InterPro:Vps4_C	TIGR:cd00009	SEG:seg	:

Description

No Description!

Coordinates

chr6D:-:452125535..452127825

Molecular Weight (calculated)

81443.8 Da

IEP (calculated)

5.918

GRAVY (calculated)

-0.310

Length

736 amino acids

Sequence
(BLAST)

001: MCTLHPATME KLSIFKGNIV LLKGKRRHNT VCMALPDDTC EGHKLKINKV ARSNLRVRIA DVVSVHMCHD AKYGRRVHIL PLDDTVEGIG GNLFDVYLKP
101: YFVDAYRPLH KGDFFLVRGG MRSVEFKVME IDPATEYCIV APNTEIFCEG EPVKREDEER LDGVGYDDVG GMGKPLTLIR ELVELPLRHP QIFKSIGVKP
201: PKGILLYGPP GSGKTLIARA VANETGAFFF LINGPEIMSK MAGESESNLR KAFEEAEKNA PSIIFIDEID SIAPNREKTH GEVERRIVSQ LLTLMDGMKA
301: RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEVGR LEVLRIHTKN MKLDEDVNLE VIAKDTHGYI GADLAALCTE AALQCIREKM DVIDLEDDTI
401: DAEILNSMAV TNDHLKTALV GTNPSALRET VVKVPNVSWN DIGGLDGVKR ELQETVQYPV EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL EKAIANECQA
501: NFISIKGPEL LTMWFGESEA NVREIFDKAR QSTPCVLFFD ELDSIATQRG GRVGDAGDAA DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG
601: RLDQLIYIPC RTRPRGTRSS RPASGSLLWP RTSTSVRSQG SPLASARLGK DTMEVDGGQE EEEVAEIKAA HFEKSMKYAR RSVSDADIRK YQAFAQTLQQ
701: SRGFGTEFRF PAQPQAAAAA VHTSTAADED EDDLYK

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.