Factsheet for TraesCS1D01G340100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G153300.1	Wheat	cytosol	79.69	91.07
TraesCS1D01G194500.1	Wheat	cytosol	82.03	79.25
GSMUA_Achr5P13290_001	Banana	cytosol	54.69	63.64
KRG99061	Soybean	cytosol	27.34	35.0
KRG94277	Soybean	cytosol	25.78	31.88
TraesCS1D01G248000.1	Wheat	cytosol	92.19	29.91
TraesCS3D01G154000.1	Wheat	cytosol	91.02	29.57
TraesCS1D01G399100.1	Wheat	cytosol	90.62	29.4
TraesCS3D01G153900.1	Wheat	cytosol	89.06	28.93
TraesCS1D01G223800.1	Wheat	cytosol	82.81	26.5
TraesCS1D01G253100.1	Wheat	cytosol	82.81	26.5
TraesCS4D01G267800.1	Wheat	cytosol	83.2	26.2
TraesCS4D01G267600.2	Wheat	cytosol	83.59	26.16
TraesCS3D01G153800.1	Wheat	cytosol	66.41	25.0
TraesCS6D01G360700.1	Wheat	cytosol	71.48	24.86
CDX73571	Canola	cytosol	68.36	23.55
CDX78154	Canola	cytosol	67.97	23.39
TraesCS6D01G149500.1	Wheat	cytosol	32.81	23.33
KRH45638	Soybean	cytosol	28.91	23.05
TraesCS7D01G375500.1	Wheat	cytosol	33.2	21.25
TraesCS2D01G083900.1	Wheat	golgi	33.98	20.96
TraesCS2D01G476000.1	Wheat	cytosol	33.98	20.86
TraesCS6D01G326400.1	Wheat	cytosol	34.38	20.66
TraesCS7D01G532000.1	Wheat	cytosol	32.03	20.6
TraesCS7D01G157200.1	Wheat	cytosol	33.98	20.42
TraesCS6D01G166700.1	Wheat	cytosol, golgi	32.42	19.86
TraesCS7D01G350300.1	Wheat	cytosol	32.42	19.62
TraesCS3D01G417000.1	Wheat	cytosol	32.03	18.89
TraesCS7D01G134800.1	Wheat	cytosol	31.64	18.88
TraesCS2D01G471200.1	Wheat	cytosol	32.03	18.1
TraesCS4D01G190600.1	Wheat	cytosol, golgi	31.25	17.78
TraesCS2D01G087900.1	Wheat	cytosol, golgi	30.47	17.37
TraesCS2D01G353100.1	Wheat	cytosol	37.11	16.73
TraesCS3D01G443600.1	Wheat	mitochondrion	41.02	14.04
TraesCS5D01G081900.1	Wheat	mitochondrion	40.23	13.86
TraesCS7D01G023600.1	Wheat	mitochondrion	38.67	12.61
TraesCS2D01G458300.3	Wheat	mitochondrion	42.97	11.79
TraesCS1D01G073600.1	Wheat	cytosol, plastid	39.45	10.05
TraesCS4D01G105500.2	Wheat	cytosol, plastid	39.45	10.04
TraesCS7D01G277100.1	Wheat	cytosol, peroxisome, plastid	36.33	8.53
TraesCS5D01G306600.2	Wheat	mitochondrion	35.55	8.32

Protein Annotations

EnsemblPlants:TraesCS1D01G340100.1	EnsemblPlantsGene:TraesCS1D01G340100	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase
InterPro:Vps4_C	PANTHER:PTHR23077	PANTHER:PTHR23077:SF92	PFAM:PF00004	PFAM:PF09336	ScanProsite:PS00674
SEG:seg	SMART:SM00382	SUPFAM:SSF52540	TIGR:cd00009	MapMan:35.1	:

Description

No Description!

Coordinates

chr1D:+:430226513..430228940

Molecular Weight (calculated)

28264.0 Da

IEP (calculated)

5.212

GRAVY (calculated)

-0.253

Length

256 amino acids

Sequence
(BLAST)

001: MSPSKGVLFY GPPGCGNTLL AKAIANECQA NFISIKGPEL LTMWFGESEA NMREIFNKAC QSALCVLFFD ELDSIATQRG GRVGDAGGAV DRVLNQLLTE
101: MDNMNAKKTV FIIGATNRPD IIDSALLRPG RLDHLIYIPL PDEASQQQIF KACLRKSPMA KDVDLGALAR FTAGFSGADI TEICQRACKY AIREDIEKDM
201: VRHRMGKDTM EVDGGQEEEA VAEIKAAHFE ESMKYARQSV SDADIRKYQA FPQKLQ

Best Arabidopsis Sequence Match ( AT1G03000.1 )
(BLAST)

001: MVERRNPLVL SSTRSTLRSV LNSSQPSSAD GDRVLNKDGD LLRGNARLSA GILRWRKDGE NVSDAKLDSL DDSALVGLST QLLKRLSINS GSLVVVKNIE
101: IGIQRVAQVV VLDPPKTTLE DASLTQVPVS DSLHTMLVFP TYDLMGQQLL DQEVAYLSPM LAFNLSLHIS CLKSLVHRGN GVLEKYFEAK CDEEFIGKSA
201: EDGSKIGLDL EPVSQVPGYA SHLRVSFVKI PECGTIPSLK VNSSFEAEER QGLIDSALQK YFGTDRQLSR GDIFRIYIDW NCGSSICNPC SQRLCSESDD
301: YIYFKVIAME PSNERFLRVN HSQTALVLGG TVSSGLPPDL LVYRSKVPMP LQEETVNILA SVLSPPLCPS ALASKLRVAV LLHGIPGCGK RTVVKYVARR
401: LGLHVVEFSC HSLLASSERK TSTALAQTFN MARRYSPTIL LLRHFDVFKN LGSQDGSLGD RVGVSFEIAS VIRELTEPVS NGDSSMEEKS NSNFSENEVG
501: KFRGHQVLLI ASAESTEGIS PTIRRCFSHE IRMGSLNDEQ RSEMLSQSLQ GVSQFLNISS DEFMKGLVGQ TSGFLPRDLQ ALVADAGANL YISQESETKK
601: INSLSDDLHG VDIHQASQID NSTEKLTAKE DFTKALDRSK KRNASALGAP KVPNVKWDDV GGLEDVKTSI LDTVQLPLLH KDLFSSGLRK RSGVLLYGPP
701: GTGKTLLAKA VATECSLNFL SVKGPELINM YIGESEKNVR DIFEKARSAR PCVIFFDELD SLAPARGASG DSGGVMDRVV SQMLAEIDGL SDSSQDLFII
801: GASNRPDLID PALLRPGRFD KLLYVGVNAD ASYRERVLKA LTRKFKLSED VSLYSVAKKC PSTFTGADMY ALCADAWFQA AKRKVSKSDS GDMPTEEDDP
901: DSVVVEYVDF IKAMDQLSPS LSITELKKYE MLRDQFQGRS S

Arabidopsis Description

PEX6Peroxisome biogenesis protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.