Factsheet for TraesCS1D01G399100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G419200.1	Wheat	cytosol	98.1	98.1
TraesCS3A01G145100.1	Wheat	cytosol	95.94	95.94
TraesCS3D01G154000.1	Wheat	cytosol	95.69	95.81
TraesCS3B01G171200.1	Wheat	cytosol	95.44	95.56
TraesCS3D01G153300.1	Wheat	cytosol	27.12	95.54
TraesCS1D01G248000.1	Wheat	cytosol	95.06	95.06
TraesCS3D01G153800.1	Wheat	cytosol	81.88	95.0
HORVU0Hr1G006340.1	Barley	cytosol	94.17	94.29
TraesCS3D01G153900.1	Wheat	cytosol	93.03	93.15
HORVU3Hr1G029450.1	Barley	cytosol	94.17	91.96
HORVU3Hr1G029440.1	Barley	cytosol	94.17	91.28
TraesCS1D01G340100.1	Wheat	cytosol	29.4	90.62
TraesCS6D01G360700.1	Wheat	cytosol	84.41	90.49
TraesCS1D01G194500.1	Wheat	cytosol	29.02	86.42
EER95525	Sorghum	cytosol	83.9	84.87
KXG40206	Sorghum	cytosol	83.9	84.65
TraesCS4D01G267800.1	Wheat	cytosol	84.03	81.55
TraesCS4D01G267600.2	Wheat	cytosol	84.16	81.17
TraesCS1D01G223800.1	Wheat	cytosol	82.13	81.0
TraesCS1D01G253100.1	Wheat	cytosol	81.24	80.12
GSMUA_Achr3P00250_001	Banana	cytosol	18.25	73.47
TraesCS2D01G353100.1	Wheat	cytosol	29.53	41.02
TraesCS5D01G081900.1	Wheat	mitochondrion	32.57	34.59
TraesCS6D01G149500.1	Wheat	cytosol	15.59	34.17
TraesCS3D01G443600.1	Wheat	mitochondrion	31.94	33.69
TraesCS7D01G375500.1	Wheat	cytosol	16.73	33.0
TraesCS7D01G157200.1	Wheat	cytosol	17.74	32.86
TraesCS6D01G326400.1	Wheat	cytosol	17.49	32.39
TraesCS7D01G532000.1	Wheat	cytosol	16.22	32.16
TraesCS7D01G023600.1	Wheat	mitochondrion	31.56	31.72
TraesCS2D01G476000.1	Wheat	cytosol	16.48	31.18
TraesCS2D01G083900.1	Wheat	golgi	16.22	30.84
TraesCS3D01G417000.1	Wheat	cytosol	16.35	29.72
TraesCS7D01G134800.1	Wheat	cytosol	15.72	28.9
TraesCS6D01G166700.1	Wheat	cytosol, golgi	15.08	28.47
TraesCS7D01G350300.1	Wheat	cytosol	15.08	28.13
TraesCS2D01G471200.1	Wheat	cytosol	15.97	27.81
TraesCS4D01G190600.1	Wheat	cytosol, golgi	15.84	27.78
TraesCS2D01G087900.1	Wheat	cytosol, golgi	15.46	27.17
TraesCS4D01G105500.2	Wheat	cytosol, plastid	32.95	25.84
TraesCS1D01G073600.1	Wheat	cytosol, plastid	32.7	25.67
TraesCS2D01G458300.3	Wheat	mitochondrion	27.12	22.94
TraesCS7D01G277100.1	Wheat	cytosol, peroxisome, plastid	23.7	17.16
TraesCS5D01G306600.2	Wheat	mitochondrion	23.7	17.09

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	PFAM:PF09336
ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	EnsemblPlantsGene:TraesCS1D01G399100	EnsemblPlants:TraesCS1D01G399100.1
InterPro:Vps4_C	TIGR:cd00009	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:-:465900671..465903040

Molecular Weight (calculated)

87092.4 Da

IEP (calculated)

5.138

GRAVY (calculated)

-0.272

Length

789 amino acids

Sequence
(BLAST)

001: MASAATSKKA ANRLVVEEAA TNDDNSVCNL HPATMEKLSI FQGDIVLLKG KRRHNTVCMA LADDTCEGHK LRINKVARSN LRVRIADVVS VHLCHDAKFG
101: KRVHILPLDD TVEGITGNLF GAYLKPYFVD AFRPVHKGDL FLVRGGMRSV EFKVMEIDPA VDYCVVAPNT EIFCEGEPVK REDEERLDDV GYDDVGGMGK
201: PLTLIRELVE LPLRHPQIFK SIGVKPPKGI LLYGPPGSGK TLIARAVANE TGAFFFLING PEIMSKMAGE SESNLRKAFE EAEKNAPSII FIDEIDSIAP
301: NREKTHGEVE RRIVSQLLTL MDGMKARAHV IVMGATNRPN SIDPALRRFG RFDREIDIGV PDKVGRLEVL RIHTKSMKLD EDVNLELIAK DTHGYVGADL
401: AALCTEAALQ CIREKMDVID LEDDTIDAEI LNSMAVTNDH LKTALVGTNP SALRETVVEV PNVSWTDIGG LDGVKRELQE TVQYPVEHPE KFEKFGMSPS
501: KGVLFYGPPG CGKTLLAKAI ANECQANFIS IKGPELLTMW FGESEANVRE IFDKARQSAP CVLFFDELDS IATQRGGRMG DAGGAADRVL NQLLTEIDGM
601: NAKKTVFIIG ATNRPDIIDS ALLRPGRLDQ LIYIPLPDEA SRHQIFKACL RKSPVAKDVD LGALARFTAS FSGADITEIC QRACKYAIRE DIEKDMERQR
701: MGKDTMDVDG GQKDEEMAEI KAAHFEESMK YARRSVSDAD IRKYQAFAQT LQQSRGFGME FRFPAQPQAA EAAADTTAAA DEDEDDLYK

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.