Skip to main content
crop-pal logo
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 6
  • endoplasmic reticulum 1
  • nucleus 1
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG40206 Sorghum cytosol 98.97 98.72
TraesCS3A01G144500.1 Wheat cytosol 58.33 85.37
TraesCS3D01G153800.1 Wheat cytosol 74.23 85.15
TraesCS3D01G154000.1 Wheat cytosol 85.51 84.64
TraesCS3B01G171200.1 Wheat cytosol 85.38 84.52
TraesCS3A01G145000.1 Wheat cytosol 75.13 84.2
TraesCS1B01G419200.1 Wheat cytosol 85.13 84.16
TraesCS3B01G172100.1 Wheat cytosol 85.13 84.05
TraesCS1B01G259200.1 Wheat cytosol 85.0 84.03
TraesCS3B01G172000.1 Wheat cytosol 84.36 83.93
TraesCS3B01G171400.1 Wheat cytosol 78.21 83.91
TraesCS3A01G145100.1 Wheat cytosol 84.87 83.9
TraesCS1D01G399100.1 Wheat cytosol 84.87 83.9
TraesCS3B01G154400.1 Wheat cytosol 84.74 83.88
TraesCS1D01G248000.1 Wheat cytosol 84.49 83.52
HORVU0Hr1G006340.1 Barley cytosol 83.97 83.12
KRG99061 Soybean cytosol 21.15 82.5
TraesCS3D01G153900.1 Wheat cytosol 82.95 82.11
KRG94277 Soybean cytosol 21.67 81.64
TraesCS3B01G171300.1 Wheat cytosol 76.03 81.34
HORVU3Hr1G029450.1 Barley cytosol 83.97 81.06
EER94171 Sorghum cytosol 84.1 80.99
VIT_08s0040g01480.t01 Wine grape cytosol 83.46 80.77
KRH22853 Soybean cytosol, endoplasmic reticulum, mitochondrion 83.46 80.67
KRH26511 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 83.46 80.67
KRG96011 Soybean endoplasmic reticulum, mitochondrion, nucleus 83.46 80.57
EER92840 Sorghum cytosol 83.59 80.49
HORVU3Hr1G029440.1 Barley cytosol 83.97 80.47
KRH67721 Soybean endoplasmic reticulum, nucleus 83.33 80.45
TraesCS6D01G360700.1 Wheat cytosol 75.77 80.3
PGSC0003DMT400050662 Potato cytosol 82.82 80.25
Solyc06g074980.2.1 Tomato nucleus 82.82 80.25
Solyc11g069720.1.1 Tomato cytosol, extracellular, nucleus, plastid 82.82 80.25
CDY13308 Canola cytosol 83.21 80.12
CDY11249 Canola cytosol 81.92 80.08
KRH19916 Soybean endoplasmic reticulum, mitochondrion 83.21 80.02
Bra003123.1-P Field mustard cytosol 83.08 80.0
PGSC0003DMT400031321 Potato cytosol 82.56 80.0
TraesCS1A01G248500.1 Wheat cytosol 61.15 79.9
KRH32530 Soybean endoplasmic reticulum, mitochondrion 83.21 79.83
Bra034089.1-P Field mustard cytosol 82.82 79.75
CDY07941 Canola cytosol 82.69 79.73
CDY54618 Canola cytosol 82.56 79.7
CDY22207 Canola cytosol 82.69 79.63
CDY41316 Canola cytosol, extracellular 82.69 79.63
CDX73996 Canola cytosol 82.56 79.6
Bra001297.1-P Field mustard cytosol 82.56 79.6
AT3G53230.1 Thale cress cytosol 83.08 79.51
AT5G03340.1 Thale cress cytosol 82.56 79.51
Bra029795.1-P Field mustard cytosol 82.44 79.48
CDY41581 Canola cytosol 82.31 79.46
AT3G09840.1 Thale cress cytosol 82.31 79.36
PGSC0003DMT400027096 Potato cytosol 82.18 79.33
Solyc10g084050.1.1 Tomato cytosol, nucleus, plastid, unclear 82.05 79.21
PGSC0003DMT400055513 Potato cytosol 81.79 79.06
CDX80862 Canola cytosol, plastid 81.92 78.99
VIT_06s0061g00340.t01 Wine grape cytosol 77.44 78.95
Bra006978.1-P Field mustard cytosol 81.92 78.79
TraesCS5B01G323100.1 Wheat cytosol 58.59 78.66
KRH30601 Soybean cytosol 81.03 78.41
Solyc09g008070.2.1 Tomato cytosol, unclear 80.38 77.6
CDX73571 Canola cytosol 73.72 77.39
CDX78154 Canola cytosol 73.46 77.02
KRH25081 Soybean cytosol, endoplasmic reticulum, mitochondrion 70.13 75.55
GSMUA_Achr3P00250_001 Banana cytosol 18.59 73.98
CDX67563 Canola cytosol 81.54 72.35
EES14976 Sorghum cytosol 65.51 64.52
KRH45638 Soybean cytosol 25.38 61.68
Bra005733.1-P Field mustard cytosol 82.31 58.15
KXG26645 Sorghum cytosol 28.46 39.08
EES06471 Sorghum cytosol 16.54 32.25
EER87717 Sorghum cytosol 31.92 32.13
EER88627 Sorghum cytosol 16.28 31.91
EES07646 Sorghum cytosol 16.92 30.99
EES01223 Sorghum cytosol 16.92 30.99
KXG39890 Sorghum cytosol 16.54 30.71
EER91182 Sorghum cytosol 16.41 30.48
KXG31298 Sorghum cytosol 16.03 29.21
EER87942 Sorghum cytosol 16.03 29.07
EES06492 Sorghum cytosol 15.0 27.73
EER88603 Sorghum cytosol 14.62 27.21
EER99961 Sorghum cytosol 15.26 26.62
EES09632 Sorghum cytosol, plastid 32.69 25.81
EES12865 Sorghum mitochondrion 27.44 23.06
EES15200 Sorghum cytosol 24.1 17.18
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.4.2.1Gene3D:2.40.40.20Gene3D:3.10.330.10Gene3D:3.40.50.300InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreInterPro:Asp_de-COase-like_dom_sfUniProt:C5WYU4InterPro:CDC48_domain_2-like_sf
InterPro:CDC4_N-term_subdomInterPro:Cdc48_dom2ncoils:CoilEnsemblPlants:EER95525ProteinID:EER95525ProteinID:EER95525.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005524GO:GO:0016787
InterPro:P-loop_NTPasePFAM:PF00004PFAM:PF02359PFAM:PF02933ScanProsite:PS00674PANTHER:PTHR23077
PANTHER:PTHR23077:SF122SMART:SM00382SMART:SM01072SMART:SM01073EnsemblPlantsGene:SORBI_3001G508000SUPFAM:SSF50692
SUPFAM:SSF52540SUPFAM:SSF54585TIGRFAMs:TIGR01243UniParc:UPI0001A830D9RefSeq:XP_002468527.1SEG:seg
Description
hypothetical protein
Coordinates
chr1:-:77588448..77591097
Molecular Weight (calculated)
86044.0 Da
IEP (calculated)
5.129
GRAVY (calculated)
-0.279
Length
780 amino acids
Sequence
(BLAST)
001: MKKAANKLVV EEPTNDDVSI CNLHPATMEK LSIYHGDVVL LKGKRRRDTI CIAMNNEGCG EHALGINRSV RSNLRVRLGD VVSVHPCHDA AYGAKVHVLP
101: LDDTVEGLTG DLFEAYLKPH FLNAYRPVRK GDLFLVRGGM RSVEFKVVDI HPPAEYCIVA DDTVVFCDGE PVKREDEERL DGVGYDDVGG MRKQLAQIRE
201: LVELPLRHPQ LFKSIGVKPP KGILLYGPPG SGKTLIARAV ANETGAFFFC INGPEIMSKL AGESESNLRK AFQEAEKNAP SIIFIDEIDS IAPKREKTHG
301: EVERRIVSQL LTLMDGLKTR AHVIVMGATN RPNSIDPALR RFGRFDREID IGVPDEVGRL EVLRVHTKNM KLAEDVNLEA VSKDTHGYVG ADLAALCTEA
401: ALQCIREKMD VIDLEDDTID AEILNSMAIT NDHLKTALAG TNPSALRETV VEVPNVSWAD IGGLEGVKRE LQETVQYPVE HPDMFEKFGM SPSRGVLFYG
501: PPGCGKTLLA KAIANECQAN FISVKGPELL TMWFGESEAN VRDIFDKARQ SAPCVLFFDE LDSIAMQRGS HVGDAGGAAD RVLNQLLTEM DGMSAKKTVF
601: IIGATNRPDI IDPALLRPGR LDQLIYIPLP DEASRQQIFK ACLRKSPVAK NVDLGALARF TAGFSGADIT EICQRACKYA IREDIEKDIE RERKAKENPG
701: EMAVDCADDE PAQIGAVHFE ESMRYARRSV SDADIRKYQA FAQTLQQSRG FGTEFRFPIR PQQAAEAEAA ADSEEDDIYS
Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)
001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS
Arabidopsis Description
CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.