CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G458300.3	Wheat	mitochondrion	82.65	82.21
TraesCS2A01G457600.3	Wheat	mitochondrion	82.44	81.99
TraesCS2B01G480000.3	Wheat	mitochondrion	82.0	81.56
Os04t0617600-01	Rice	cytosol	81.03	80.0
Zm00001d002462_P010	Maize	mitochondrion	91.06	79.49
HORVU2Hr1G104530.9	Barley	cytosol	77.91	79.19
GSMUA_Achr6P20030_001	Banana	cytosol	57.65	55.38
KRG96401	Soybean	mitochondrion	53.12	53.65
VIT_07s0104g01610.t01	Wine grape	cytosol	52.48	51.92
Solyc06g008730.2.1	Tomato	cytosol	51.94	51.88
CDY32490	Canola	mitochondrion	51.62	51.67
PGSC0003DMT400013679	Potato	cytosol	51.72	51.61
CDY37450	Canola	mitochondrion	51.4	51.57
KRH68139	Soybean	cytosol	36.96	51.19
AT1G03000.1	Thale cress	mitochondrion	51.72	51.01
CDX89923	Canola	cytosol	41.16	50.0
KXG26645	Sorghum	cytosol	18.1	29.58
EES06471	Sorghum	cytosol	11.96	27.75
EER94171	Sorghum	cytosol	24.03	27.53
EER92840	Sorghum	cytosol	24.03	27.53
KXG40206	Sorghum	cytosol	23.17	27.49
EER95525	Sorghum	cytosol	23.06	27.44
EER88627	Sorghum	cytosol	11.75	27.39
EES14976	Sorghum	cytosol	23.17	27.15
EES01223	Sorghum	cytosol	12.39	27.0
EER99961	Sorghum	cytosol	12.93	26.85
EES07646	Sorghum	cytosol	12.28	26.76
KXG39890	Sorghum	cytosol	12.07	26.67
EER91182	Sorghum	cytosol	11.96	26.43
EES06492	Sorghum	cytosol	11.85	26.07
KXG31298	Sorghum	cytosol	11.96	25.93
Bra032565.1-P	Field mustard	mitochondrion	51.72	25.75
EER87942	Sorghum	cytosol	11.85	25.58
EER88603	Sorghum	cytosol	11.53	25.54
EER87717	Sorghum	cytosol	21.23	25.42
EES09632	Sorghum	cytosol, plastid	21.66	20.34
EES15200	Sorghum	cytosol	21.66	18.37

Protein Annotations

Gene3D:1.10.8.60	MapMan:23.4.1.5.1.2	Gene3D:3.40.50.300	EntrezGene:8066790	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	UniProt:C5YG31	EnsemblPlants:EES12865	ProteinID:EES12865	ProteinID:EES12865.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006629	GO:GO:0006635	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016043	GO:GO:0016558	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF9	SMART:SM00382	EnsemblPlantsGene:SORBI_3006G216800	SUPFAM:SSF52540	unigene:Sbi.1778
UniParc:UPI0001A87666	RefSeq:XP_002448537.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:56456307..56462044

Molecular Weight (calculated)

100929.0 Da

IEP (calculated)

6.961

GRAVY (calculated)

-0.099

Length

928 amino acids

Sequence
(BLAST)

001: MVEMRQRRKP LVLASTQALL DSLPGDRPPP PPLEPVCLRT GVLRFPSGPG AGAEFGELAS FVALPASALR RLTVVTGTPV LVKNTDNNVG RIVKAVLFDD
101: MSLRKSHSEY TDQVVSASPS DRAMGFLPCR MFPATGLASM DEVVAYVSPL LAFNLGLHVS CLKLLIQRGG QPFKFCSRAE EIDATAGAGS DLSLHLDLLP
201: CPQVPKYALH LRVSVVRIPD CGVLASLKIN SSFGGSDYQD MVDQALNEYF KFDRFLARGD VFCIQNSWNC GSSCCLACNK QDNKLHPRNM IYFKVTGMEP
301: SDEPILRVNC NETALVLGGA ASAAIPPYSF FAASGNSVPL QSEIVEHLAS IIAPALCPSD ILPKIKFSTF LYGPSGCGKR TVVRHVANHL GLHVVECSCH
401: DLMTSSESGA PAALATAFKE AQKYSPCIIL LRHFDAIGNA SSNEGPQSEQ SGIASSIESI IKQYTGQCWV AKDSLPGKDV NGSSYLVEPG CVSSLQIILV
501: ATADSSEGMQ QSIRRCFRHE IDMKTMNEEQ RNKLISEMLQ GIPKVADESI GDKFVKDLAA QTSGFMPRDI LALVADAGVS FAHKIAAGKD SKGISKHEIL
601: PESSSATQNE EKHFCKEDIM SSMERAKKRN RAALGTPKVP NVKWEDVGGL EEVKKVILDT IQLPLMYKHL FSSKLRKRSG VLLYGPPGTG KTLLAKAVAT
701: ECSLNFLSVK GPELINMYVG ESEKNVRDIF EKARSARPCV IFFDELDSLA PARGSSADSG GVMDRVVSQL LVEIDGLSDN SQDLFIIGAT NRPDLLDSAL
801: LRPGRFDKLL YVGVNTDASY RERILKAQTR KYKLHKNVSL LSVAQRCPPN FTGADIYALC ADAWFHAAKR SVKTFEIDPS RSNDASAEEV IVEIDDFITV
901: LGDIAPSLSL EELQNYEQLR QKIEGPSR

Best Arabidopsis Sequence Match ( AT1G03000.1 )
(BLAST)

001: MVERRNPLVL SSTRSTLRSV LNSSQPSSAD GDRVLNKDGD LLRGNARLSA GILRWRKDGE NVSDAKLDSL DDSALVGLST QLLKRLSINS GSLVVVKNIE
101: IGIQRVAQVV VLDPPKTTLE DASLTQVPVS DSLHTMLVFP TYDLMGQQLL DQEVAYLSPM LAFNLSLHIS CLKSLVHRGN GVLEKYFEAK CDEEFIGKSA
201: EDGSKIGLDL EPVSQVPGYA SHLRVSFVKI PECGTIPSLK VNSSFEAEER QGLIDSALQK YFGTDRQLSR GDIFRIYIDW NCGSSICNPC SQRLCSESDD
301: YIYFKVIAME PSNERFLRVN HSQTALVLGG TVSSGLPPDL LVYRSKVPMP LQEETVNILA SVLSPPLCPS ALASKLRVAV LLHGIPGCGK RTVVKYVARR
401: LGLHVVEFSC HSLLASSERK TSTALAQTFN MARRYSPTIL LLRHFDVFKN LGSQDGSLGD RVGVSFEIAS VIRELTEPVS NGDSSMEEKS NSNFSENEVG
501: KFRGHQVLLI ASAESTEGIS PTIRRCFSHE IRMGSLNDEQ RSEMLSQSLQ GVSQFLNISS DEFMKGLVGQ TSGFLPRDLQ ALVADAGANL YISQESETKK
601: INSLSDDLHG VDIHQASQID NSTEKLTAKE DFTKALDRSK KRNASALGAP KVPNVKWDDV GGLEDVKTSI LDTVQLPLLH KDLFSSGLRK RSGVLLYGPP
701: GTGKTLLAKA VATECSLNFL SVKGPELINM YIGESEKNVR DIFEKARSAR PCVIFFDELD SLAPARGASG DSGGVMDRVV SQMLAEIDGL SDSSQDLFII
801: GASNRPDLID PALLRPGRFD KLLYVGVNAD ASYRERVLKA LTRKFKLSED VSLYSVAKKC PSTFTGADMY ALCADAWFQA AKRKVSKSDS GDMPTEEDDP
901: DSVVVEYVDF IKAMDQLSPS LSITELKKYE MLRDQFQGRS S

Arabidopsis Description

PEX6Peroxisome biogenesis protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.