CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
endoplasmic reticulum 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050303_P001	Maize	cytosol	92.55	92.78
HORVU5Hr1G069560.1	Barley	cytosol	21.59	80.66
HORVU6Hr1G053620.1	Barley	cytosol	35.86	79.11
HORVU2Hr1G011690.1	Barley	cytosol	77.27	74.27
TraesCS2A01G060000.1	Wheat	cytosol	78.91	72.34
Os08t0413000-00	Rice	mitochondrion	75.88	66.48
EER92840	Sorghum	cytosol	67.93	66.42
EER94171	Sorghum	cytosol	67.3	65.8
EER95525	Sorghum	cytosol	64.52	65.51
KXG40206	Sorghum	cytosol	64.52	65.35
KXG26645	Sorghum	cytosol	28.41	39.61
EER87717	Sorghum	cytosol	32.2	32.9
EES07646	Sorghum	cytosol	17.05	31.69
EES01223	Sorghum	cytosol	17.05	31.69
KXG39890	Sorghum	cytosol	16.79	31.67
EES06471	Sorghum	cytosol	15.91	31.5
EER88627	Sorghum	cytosol	15.66	31.16
EER91182	Sorghum	cytosol	16.29	30.71
EER87942	Sorghum	cytosol	16.16	29.77
KXG31298	Sorghum	cytosol	16.04	29.67
EES06492	Sorghum	cytosol	15.66	29.38
EER88603	Sorghum	cytosol	15.53	29.36
EER99961	Sorghum	cytosol	15.91	28.19
EES09632	Sorghum	cytosol, plastid	34.72	27.83
EES12865	Sorghum	mitochondrion	27.15	23.17
EES15200	Sorghum	cytosol	23.48	17.0

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	EntrezGene:8070075
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	UniProt:C5YKV0
InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	EnsemblPlants:EES14976	ProteinID:EES14976	ProteinID:EES14976.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077
PANTHER:PTHR23077:SF73	SMART:SM00382	SMART:SM01072	SMART:SM01073	EnsemblPlantsGene:SORBI_3007G125200	SUPFAM:SSF50692
SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	UniParc:UPI0001A87A8C	RefSeq:XP_002445481.1	:

Description

hypothetical protein

Coordinates

chr7:-:53490200..53492578

Molecular Weight (calculated)

87318.4 Da

IEP (calculated)

5.384

GRAVY (calculated)

-0.205

Length

792 amino acids

Sequence
(BLAST)

001: MSSSSMMDAD GKKDFSTAIL ERKKAPNRLL ADDGEGEVAI DNSMVALSPA TAFQLEIFTG DLVLLRGKRR KETVCYAVFD ASCPDARVRL NRVVRSNIRV
101: HLGDIVTVKR LDEVPTGTRV QIAPFEDTIT GISGDLFDAY LKPYFGNDAL RPVCKGDRFI VRGNMHAVEF KVVDTEPADR VLVRPDTAIF CSDQPVKRED
201: EERLDGPGYD DVGGVRKQLA QIRELVELPL RHPKLFQTLG VKPPKGILLY GPPGTGKTLL ARAIASESGA HFLVVNGPEI MSMMAGQSEA NLRNVFEDAE
301: KSAPSIIFMD EIDAIAPNRD KTHGEVERRV VSQLLTLMDG LRPRAQVVVI GATNRPNSLD PALRRFGRFD RELDIGVPDE VGRLEILRIH SKDMPLAEDV
401: DLERIGKDTH GFVGADLAAL CSEAALQLIR EKMDVIDVEE ETIDVDVLNS LRVCNEHLKH AKEVTKPSAL RERGLVEVPK VSWDDIGGLE DVKLELQETV
501: QYPVEHPEMF EMFGMSPSRG VLFYGPPGCG KTMLAKAIAK ECKANFISVK GPELLTMWYG ESESNVRDLF DKARSAAPSI LFFDELDSIA VKRGNSVGDV
601: GGTSDRVLNQ LLTEMDGINA KKTVFVIGAT NRPDIIDPAM LRPGRLDQLI YIPLPDEPSR LQIFKSCLRR SPVSRRVHLP ALARLTAGFS GADIAEICQR
701: ACKLAVRDVI QRSLKVGKAA AMRGAEMGIG HFTEALKHAR RSVSDLDVMK YDFLAKRLKG GAGFEDEPII AAPMGKEPLI TEMEDDDDSL LY

Best Arabidopsis Sequence Match ( AT3G53230.1 )
(BLAST)

001: MANQAESSDS KGTKKDFSTA ILEKKKAANR LVVDEAINDD NSVVSLHPDT MEKLQLFRGD TILIKGKKRK DTVCIALADE TCDEPKIRMN KVVRSNLRVR
101: LGDVISVHQC PDVKYGNRVH ILPLDDTIEG VSGNIFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPDTEIFCE GEPIKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEIG RLEVLRIHTK NMKLAEDVDL
401: ERVSKDTHGY VGADLAALCT EAALQCIREK MDVIDLDDEE IDAEILNSMA VSNDHFQTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GNSVGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEESRYQI FKSCLRKSPV AKDVDLRALA KYTQGFSGAD ITEICQRSCK
701: YAIRENIEKD IEKERKRAES PEAMEEDEEE IAEIKAGHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFPDA PTGTTGAFPG AAATVGGVDP
801: FATSGGAADD DDLYS

Arabidopsis Description

CDC48DCell division control protein 48 homolog D [Source:UniProtKB/Swiss-Prot;Acc:Q9SCN8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.