Factsheet for Bra032565.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
peroxisome 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32490	Canola	mitochondrion	49.14	98.81
AT1G03000.1	Thale cress	mitochondrion	42.11	83.42
VIT_07s0104g01610.t01	Wine grape	cytosol	32.24	64.07
Solyc06g008730.2.1	Tomato	cytosol	31.17	62.54
KRG96401	Soybean	mitochondrion	30.74	62.35
PGSC0003DMT400013679	Potato	cytosol	31.06	62.26
KRH68139	Soybean	cytosol	22.26	61.94
GSMUA_Achr6P20030_001	Banana	cytosol	29.08	56.11
EES12865	Sorghum	mitochondrion	25.75	51.72
HORVU2Hr1G104530.9	Barley	cytosol	24.79	50.6
TraesCS2B01G480000.3	Wheat	mitochondrion	25.32	50.59
TraesCS2A01G457600.3	Wheat	mitochondrion	25.27	50.48
TraesCS2D01G458300.3	Wheat	mitochondrion	25.27	50.48
Os04t0617600-01	Rice	cytosol	25.38	50.32
Zm00001d002462_P010	Maize	mitochondrion	25.64	44.97
Bra005023.1-P	Field mustard	cytosol	4.83	37.66
Bra010342.1-P	Field mustard	cytosol	6.92	28.99
Bra011079.1-P	Field mustard	cytosol	6.87	28.89
Bra017378.1-P	Field mustard	cytosol	9.12	28.19
Bra029795.1-P	Field mustard	cytosol	12.12	27.94
Bra001297.1-P	Field mustard	cytosol	12.07	27.81
Bra034089.1-P	Field mustard	cytosol	12.07	27.78
Bra030922.1-P	Field mustard	cytosol	6.33	27.7
Bra006529.1-P	Field mustard	cytosol	6.17	27.45
Bra006978.1-P	Field mustard	cytosol	11.86	27.25
Bra039688.1-P	Field mustard	cytosol	6.22	27.23
Bra002279.1-P	Field mustard	cytosol	6.12	27.21
Bra003123.1-P	Field mustard	cytosol	11.8	27.16
Bra033655.1-P	Field mustard	cytosol	5.79	27.07
Bra035338.1-P	Field mustard	cytosol	5.79	27.07
Bra040569.1-P	Field mustard	cytosol	6.28	27.02
Bra040214.1-P	Field mustard	cytosol	6.06	26.65
Bra001152.1-P	Field mustard	cytosol	6.06	26.65
Bra039431.1-P	Field mustard	cytosol	6.06	26.65
Bra024165.1-P	Field mustard	cytosol	4.61	26.63
Bra020378.1-P	Field mustard	cytosol	5.74	26.49
Bra002662.1-P	Field mustard	cytosol	5.74	26.49
Bra006775.1-P	Field mustard	cytosol	5.47	26.09
Bra022833.1-P	Field mustard	cytosol	10.14	25.44
Bra000999.1-P	Field mustard	cytosol, mitochondrion	10.62	23.77
Bra007262.1-P	Field mustard	plastid	11.0	20.92
Bra005733.1-P	Field mustard	cytosol	12.07	20.38
Bra008198.1-P	Field mustard	cytosol	6.06	17.99
Bra009342.1-P	Field mustard	cytosol	10.46	17.4
Bra020079.1-P	Field mustard	cytosol	6.49	16.78
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.32	2.71

Protein Annotations

Gene3D:1.10.8.60	MapMan:23.4.1.5.1.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
EnsemblPlantsGene:Bra032565	EnsemblPlants:Bra032565.1	EnsemblPlants:Bra032565.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	UniProt:M4EUT3	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF9	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0002543016	SEG:seg

Description

AT1G03000 (E=0.0) PEX6 | PEX6 (PEROXIN 6); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding

Coordinates

chrA09:+:36636137..36644828

Molecular Weight (calculated)

204141.0 Da

IEP (calculated)

6.544

GRAVY (calculated)

-0.525

Length

1864 amino acids

Sequence
(BLAST)

0001: MVERRSPLVL SSTRATLRSV LNSFRPDEIP GRPDSIRRSV RLPAGVLRWK RDGVNDSKFD SLDDSSLVGL STQLLKRLSI NSGSFVVINN IDIGIQRVAQ
0101: VVVLDPPNKT LEDSSVTSLP VSDSLHTMLV FPTFDTMSQQ LLDQEVAYLS PMLAFNLSLH MSCLKSLVHR GNEVLEKYFV AKFDEESASV AGESKIGLDL
0201: EPVSEVPGYA SHLRVSFVKI PECGTIQSLV VSSSFEDEER QGLIDSALNK YFGTDRVLSR GDVFRVCTEW NCGSSICVQC GQGLGSKEED FIYFKVVAME
0301: PSDERFLRVH HSQTALVLGG TVSCGLPPDL LVSSSKANMP LQVDTVNVLA SVLSPPLCPS ALSSKLRVAV LLHGLPGCGK RTVVNYVAKR LGLHVVEYSC
0401: HSLLASSEKK TSTALAQTFN MARRYAPTIL LLRHFEVFKN LGSQDGSQGD RVGVASEIAS IIRELTEPVS NGEYSSMEEN SNSNSSVDEG GKFRGHQVLL
0501: IASSESTEGL SPTIRRCFSH EIRMGSLNDE QRSELLSQSL QDVSQLLNTS SDEFVKELVG QTSGFLPRDL RALVADAGAN LFISKESETE KIDSLSGDVD
0601: QSSQLGNGSE RLKAKDDFTK ALDRSKKRNA SALGAPKVPN VKWDDVGGLE DVKSSILDTV QLPLLHKDLF SSGLRKRSGV LLYGPPGTGK TLLAKAVATE
0701: CSLNFLSVKG PELINMYIGE SEKNVRDIFE KARSARPCVI FFDELDSLAP ARGASGDSGG VMDRVVSQML AEIDGLSDSS QDLFIIGASN RPDLIDPALL
0801: RPGRFDKLLY VGVNADASYR ERVLKALTRK FKLSEDVSLY LVAKKCPSTF TGADMYALCA DAWFQAAKRK VLNSDSGDDS IPEDDPDSVV VEFIDFIKMI
0901: SVSSSDARNE IGLGFGGGIE EEEDMEMEED EEEESTHSYV SCVDPDVALS YIVGQSKCSD SPSKAGSTSK APPASSDVLA KMKNLVKSSN DSKQKPVTKT
1001: SPSSAPSNHK TLKLRIKVGS KSDLSLKNVT TYDGKQGLNM MPPSEVEEGL LIGTHDSPTK ILMAMVSFPF HKDQLLSPLS DDLIQLGKKG NIMKDALRCV
1101: KKEKLKYMPP PSNRLDGSHI VSDTDREVDK ESCEELVSKT MKLPLLSCLS PSSIHRAKEI DKISDSYVEG ALRGMNNNDL DAALMGSKPE LEDDVVGFPD
1201: QSVEGTERVN TRKDMEEGEH VDPVVKVSKT WNEEQILKPK LPKAQKSRKS SSRNGLRGKD AAVNVVNMNL PDKLQEDIGD SGESKEQEQS SLVPKAKEEK
1301: LSEESAVKES FNGVRNVEEA WKCEPDSKHP IKWSDLNKDG DNTKESVRSE VTNKHSVVIG MEPERDLCKK PKTGKSRFSA LDQPGSNKTM KDTDKPSPHE
1401: DRKRKQKENK ESGDCIRDAA VLEPSGEKVR KQKRLKGSSC EGKELPESCD RYRVVTQENG RDSASHQPLV HEAKGSLVDS LAPSALDPPE LKSERISERD
1501: KPNDTDSSAG DTRKRCRDGE GYITMDKPRT TKKAAESLRD NKEGYCTESE PQQEKAKESR NKKRPARKVS MESNKEDSSR EHQDPINKRD NTNSTKTKVM
1601: RHDDHVGSSP LKKEITSQAA SNSIKEATDL KHIADRLKNA GNNHESIGFY FQAALKFLHG ASLLESSGTE NATHKSIVTS KHIYGSTAKL CKFCAHEYEK
1701: DKDMGAAALA YKCMEVAYLR ITYSSHGNIN RYKSELEASL QVIPSGESPS FASDGENPNK TLAAEKVALS TPVRSSPKVT GNHVLSSGNN SSLSQLLTFS
1801: QNVSLAMDAS RKAQTAFAVA KGKSSDTRYS SNGITCIKRA LDFSFQDMEK LVHAVRLAME SINR

Best Arabidopsis Sequence Match ( AT1G03000.1 )
(BLAST)

001: MVERRNPLVL SSTRSTLRSV LNSSQPSSAD GDRVLNKDGD LLRGNARLSA GILRWRKDGE NVSDAKLDSL DDSALVGLST QLLKRLSINS GSLVVVKNIE
101: IGIQRVAQVV VLDPPKTTLE DASLTQVPVS DSLHTMLVFP TYDLMGQQLL DQEVAYLSPM LAFNLSLHIS CLKSLVHRGN GVLEKYFEAK CDEEFIGKSA
201: EDGSKIGLDL EPVSQVPGYA SHLRVSFVKI PECGTIPSLK VNSSFEAEER QGLIDSALQK YFGTDRQLSR GDIFRIYIDW NCGSSICNPC SQRLCSESDD
301: YIYFKVIAME PSNERFLRVN HSQTALVLGG TVSSGLPPDL LVYRSKVPMP LQEETVNILA SVLSPPLCPS ALASKLRVAV LLHGIPGCGK RTVVKYVARR
401: LGLHVVEFSC HSLLASSERK TSTALAQTFN MARRYSPTIL LLRHFDVFKN LGSQDGSLGD RVGVSFEIAS VIRELTEPVS NGDSSMEEKS NSNFSENEVG
501: KFRGHQVLLI ASAESTEGIS PTIRRCFSHE IRMGSLNDEQ RSEMLSQSLQ GVSQFLNISS DEFMKGLVGQ TSGFLPRDLQ ALVADAGANL YISQESETKK
601: INSLSDDLHG VDIHQASQID NSTEKLTAKE DFTKALDRSK KRNASALGAP KVPNVKWDDV GGLEDVKTSI LDTVQLPLLH KDLFSSGLRK RSGVLLYGPP
701: GTGKTLLAKA VATECSLNFL SVKGPELINM YIGESEKNVR DIFEKARSAR PCVIFFDELD SLAPARGASG DSGGVMDRVV SQMLAEIDGL SDSSQDLFII
801: GASNRPDLID PALLRPGRFD KLLYVGVNAD ASYRERVLKA LTRKFKLSED VSLYSVAKKC PSTFTGADMY ALCADAWFQA AKRKVSKSDS GDMPTEEDDP
901: DSVVVEYVDF IKAMDQLSPS LSITELKKYE MLRDQFQGRS S

Arabidopsis Description

PEX6Peroxisome biogenesis protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.