Factsheet for Bra040569.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02494	Canola	cytosol	97.46	99.06
Bra030922.1-P	Field mustard	cytosol	97.46	99.06
Bra005023.1-P	Field mustard	cytosol	53.81	97.49
Bra039688.1-P	Field mustard	cytosol	95.84	97.42
AT1G53750.1	Thale cress	cytosol	95.61	97.18
PGSC0003DMT400023656	Potato	cytosol	94.23	95.33
EES01223	Sorghum	cytosol	93.76	95.31
EES07646	Sorghum	cytosol	93.53	95.07
Zm00001d018309_P003	Maize	cytosol	93.53	95.07
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	93.76	94.64
PGSC0003DMT400012446	Potato	cytosol	93.76	94.64
TraesCS7B01G060900.1	Wheat	golgi	92.84	94.37
TraesCS7A01G156800.1	Wheat	cytosol	92.84	94.37
TraesCS7D01G157200.1	Wheat	cytosol	92.84	94.37
TraesCSU01G080700.1	Wheat	cytosol	92.15	93.66
TraesCS6D01G326400.1	Wheat	cytosol	92.15	93.66
TraesCS6B01G376500.1	Wheat	golgi	92.15	93.66
HORVU6Hr1G083150.1	Barley	cytosol	92.15	93.66
HORVU7Hr1G032070.1	Barley	cytosol	92.38	90.09
Zm00001d052078_P003	Maize	cytosol	93.53	88.62
VIT_11s0016g00230.t01	Wine grape	cytosol	76.67	78.12
KRH06953	Soybean	cytosol	47.58	76.3
Bra006529.1-P	Field mustard	cytosol	44.11	45.58
Bra002279.1-P	Field mustard	cytosol	43.65	45.11
Bra033655.1-P	Field mustard	cytosol	37.88	41.1
Bra035338.1-P	Field mustard	cytosol	37.41	40.6
Bra039431.1-P	Field mustard	cytosol	37.88	38.68
Bra001152.1-P	Field mustard	cytosol	37.88	38.68
Bra040214.1-P	Field mustard	cytosol	37.88	38.68
Bra020378.1-P	Field mustard	cytosol	35.8	38.37
Bra002662.1-P	Field mustard	cytosol	35.8	38.37
Bra011079.1-P	Field mustard	cytosol	37.88	37.02
Bra010342.1-P	Field mustard	cytosol	37.88	36.85
Bra006775.1-P	Field mustard	cytosol	33.26	36.83
Bra024165.1-P	Field mustard	cytosol	23.79	31.89
Bra020079.1-P	Field mustard	cytosol	43.65	26.21
Bra008198.1-P	Field mustard	cytosol	32.56	22.45
Bra017378.1-P	Field mustard	cytosol	25.87	18.57
Bra029795.1-P	Field mustard	cytosol	31.64	16.93
Bra001297.1-P	Field mustard	cytosol	31.64	16.93
Bra034089.1-P	Field mustard	cytosol	31.64	16.91
Bra003123.1-P	Field mustard	cytosol	31.64	16.91
Bra006978.1-P	Field mustard	cytosol	31.18	16.65
Bra022833.1-P	Field mustard	cytosol	27.48	16.02
Bra000999.1-P	Field mustard	cytosol, mitochondrion	27.25	14.17
Bra007262.1-P	Field mustard	plastid	28.64	12.65
Bra005733.1-P	Field mustard	cytosol	31.41	12.32
Bra009342.1-P	Field mustard	cytosol	24.02	9.28
Bra032565.1-P	Field mustard	mitochondrion	27.02	6.28
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.1	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra040569	EnsemblPlants:Bra040569.1	EnsemblPlants:Bra040569.1-P	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	UniProt:M4FHJ1	InterPro:P-loop_NTPase	PFAM:PF00004	PANTHER:PTHR23073
PANTHER:PTHR23073:SF60	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI000253EE1D	:

Description

AT1G53750 (E=3e-238) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase

Coordinates

chrScaffold000218:+:72942..75356

Molecular Weight (calculated)

48665.0 Da

IEP (calculated)

6.751

GRAVY (calculated)

-0.373

Length

433 amino acids

Sequence
(BLAST)

001: MTRDIEDEIR DEKNPRPLDE DDIALLKTYG LSPYSAANKK VEKEIKELAK RINDLCGIKE SDTGLALPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRTKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRLIGY FCSDTLDPAL LRPGRLDRKV EFGLPDLESR TQIFKIHTRT MNCERDIRFE LLARLCPNST GADIRSVCTE AGMYAIRARR
401: KTVTEKDFLD AVNKVIKGYQ KFSATPKYMP HYV

Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)

001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Arabidopsis Description

RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.