Factsheet for PGSC0003DMT400023656

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g123730.2.1	Tomato	nucleus	99.77	99.77
Bra005023.1-P	Field mustard	cytosol	55.37	99.16
PGSC0003DMT400012446	Potato	cytosol	98.83	98.6
EES01223	Sorghum	cytosol	97.66	98.12
GSMUA_AchrUn_...	Banana	cytosol	97.43	98.12
VIT_09s0002g00170.t01	Wine grape	cytosol	97.43	97.89
Zm00001d018309_P003	Maize	cytosol	97.43	97.89
Os06t0192600-01	Rice	cytosol, nucleus, plasma membrane, plastid	97.43	97.89
KRH69005	Soybean	nucleus	97.43	97.89
EES07646	Sorghum	cytosol	97.43	97.89
CDY24076	Canola	cytosol	97.2	97.65
CDY36602	Canola	cytosol	97.2	97.65
AT1G53750.1	Thale cress	cytosol	96.96	97.42
CDY30665	Canola	cytosol	96.96	97.42
Bra039688.1-P	Field mustard	cytosol	96.96	97.42
GSMUA_Achr8P16830_001	Banana	cytosol	96.73	97.41
TraesCS7A01G156800.1	Wheat	cytosol	96.5	96.95
TraesCS7B01G060900.1	Wheat	golgi	96.5	96.95
TraesCS7D01G157200.1	Wheat	cytosol	96.5	96.95
CDY25685	Canola	cytosol	96.26	96.71
CDY02494	Canola	cytosol	96.26	96.71
Bra030922.1-P	Field mustard	cytosol	96.26	96.71
TraesCS6B01G376500.1	Wheat	golgi	95.56	96.01
TraesCS6D01G326400.1	Wheat	cytosol	95.56	96.01
TraesCSU01G080700.1	Wheat	cytosol	95.56	96.01
HORVU6Hr1G083150.1	Barley	cytosol	95.56	96.01
CDX74842	Canola	cytosol	92.06	95.63
CDY20470	Canola	cytosol, plasma membrane	94.86	95.31
Bra040569.1-P	Field mustard	cytosol	95.33	94.23
HORVU7Hr1G032070.1	Barley	cytosol	96.03	92.57
CDY08201	Canola	cytosol	75.7	91.27
Zm00001d052078_P003	Maize	cytosol	97.43	91.25
CDY30663	Canola	cytosol	77.34	76.62
AT1G53780.2	Thale cress	cytosol	82.01	56.61
PGSC0003DMT400006190	Potato	cytosol	34.11	44.79
PGSC0003DMT400079514	Potato	cytosol	38.78	41.71
PGSC0003DMT400063574	Potato	cytosol	39.02	39.48
PGSC0003DMT400038718	Potato	cytosol	39.49	39.03
PGSC0003DMT400078301	Potato	cytosol	36.68	37.92
PGSC0003DMT400053010	Potato	cytosol	36.45	37.77
PGSC0003DMT400051744	Potato	cytosol	38.55	37.16
PGSC0003DMT400040872	Potato	cytosol	38.08	36.71
PGSC0003DMT400018483	Potato	cytosol	27.8	29.02
PGSC0003DMT400072919	Potato	cytosol	26.17	18.33
PGSC0003DMT400055513	Potato	cytosol	32.48	17.22
PGSC0003DMT400031321	Potato	cytosol	32.24	17.14
PGSC0003DMT400050662	Potato	cytosol	32.24	17.14
PGSC0003DMT400027096	Potato	cytosol	32.24	17.08
PGSC0003DMT400046624	Potato	cytosol	32.24	17.04
PGSC0003DMT400015455	Potato	mitochondrion	27.34	15.33
PGSC0003DMT400046254	Potato	cytosol	28.04	14.6
PGSC0003DMT400013679	Potato	cytosol	28.04	12.9

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:102584898	MapMan:19.2.6.2.1.1	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016787	GO:GO:0019538
GO:GO:0030163	UniProt:M1AIR8	InterPro:P-loop_NTPase	PFAM:PF00004	EnsemblPlantsGene:PGSC0003DMG400009154	PGSC:PGSC0003DMG400009154
EnsemblPlants:PGSC0003DMT400023656	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF60	SMART:SM00382	SUPFAM:SSF52540
TIGRFAMs:TIGR01242	UniParc:UPI0002957F79	RefSeq:XP_006342884.1	SEG:seg	:	:

Description

26S protease regulatory subunit 7 homolog A [Source:PGSC_GENE;Acc:PGSC0003DMG400009154]

Coordinates

chr3:+:61744156..61750203

Molecular Weight (calculated)

47845.0 Da

IEP (calculated)

6.066

GRAVY (calculated)

-0.388

Length

428 amino acids

Sequence
(BLAST)

001: MAPAADVEDE IKDEKNPRPL DEDDIALLKT YGLGPYSTSI KKAEKEIKEM AKKINDLCGI KESDTGLAVP SQWDLVSDKQ MMQEEQPLQV ARCTKIISPN
101: TEDAKYVINV KQIAKFVVGL GDKVSPTDIE EGMRVGVDRN KYQIQIPLPP KIDPSVTMMT VEEKPDVTYN DVGGCKEQIE KMREVVELPM LHPEKFVKLG
201: IDPPKGVLCY GPPGTGKTLL ARAVANRTDA CFIRVIGSEL VQKYVGEGAR MVRELFQMAR SKKACIVFFD EVDAIGGARF DDGVGGDNEV QRTMLEIVNQ
301: LDGFDARGNI KVLMATNRPD TLDPALLRPG RLDRKVEFGL PDLESRTQIF KIHTRTMNCE RDIRFELLAR LCPNSTGADI RSVCTEAGMY AIRARRKTVT
401: EKDFLDAVNK VIKGYQKFSA TPKYMVYN

Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)

001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Arabidopsis Description

RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.