Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0784700-00 | Rice | cytosol | 27.74 | 91.49 |
| GSMUA_AchrUn_... | Banana | cytosol | 25.97 | 90.45 |
| Bra005023.1-P | Field mustard | cytosol | 34.84 | 90.38 |
| Zm00001d018309_P003 | Maize | cytosol | 57.26 | 83.33 |
| EES01223 | Sorghum | cytosol | 57.26 | 83.33 |
| EES07646 | Sorghum | cytosol | 57.26 | 83.33 |
| TraesCS7A01G156800.1 | Wheat | cytosol | 56.94 | 82.86 |
| TraesCS7B01G060900.1 | Wheat | golgi | 56.94 | 82.86 |
| TraesCS7D01G157200.1 | Wheat | cytosol | 56.94 | 82.86 |
| AT1G53750.1 | Thale cress | cytosol | 56.94 | 82.86 |
| PGSC0003DMT400023656 | Potato | cytosol | 56.61 | 82.01 |
| PGSC0003DMT400012446 | Potato | cytosol | 56.45 | 81.59 |
| TraesCS6D01G326400.1 | Wheat | cytosol | 55.97 | 81.46 |
| TraesCS6B01G376500.1 | Wheat | golgi | 55.97 | 81.46 |
| HORVU6Hr1G083150.1 | Barley | cytosol | 55.97 | 81.46 |
| TraesCSU01G080700.1 | Wheat | cytosol | 55.97 | 81.46 |
| HORVU7Hr1G032070.1 | Barley | cytosol | 56.77 | 79.28 |
| Zm00001d052078_P003 | Maize | cytosol | 57.26 | 77.68 |
| CDY30663 | Canola | cytosol | 51.29 | 73.61 |
| AT5G20000.1 | Thale cress | cytosol | 30.32 | 44.87 |
| AT5G19990.1 | Thale cress | cytosol | 30.32 | 44.87 |
| AT5G43010.1 | Thale cress | cytosol | 26.45 | 41.1 |
| AT1G45000.1 | Thale cress | cytosol | 26.13 | 40.6 |
| AT5G58290.1 | Thale cress | cytosol | 25.48 | 38.73 |
| AT4G29040.1 | Thale cress | cytosol | 27.42 | 38.37 |
| AT3G05530.1 | Thale cress | cytosol | 26.13 | 38.21 |
| AT2G20140.1 | Thale cress | cytosol | 27.26 | 38.15 |
| AT1G09100.1 | Thale cress | cytosol | 25.97 | 38.06 |
| AT2G03670.1 | Thale cress | cytosol | 17.42 | 17.91 |
| AT3G09840.1 | Thale cress | cytosol | 22.1 | 16.93 |
| AT3G53230.1 | Thale cress | cytosol | 22.1 | 16.81 |
| AT5G03340.1 | Thale cress | cytosol | 21.94 | 16.79 |
| AT3G01610.2 | Thale cress | nucleus | 18.39 | 13.73 |
| AT3G56690.1 | Thale cress | cytosol, plastid | 20.65 | 12.52 |
| AT1G03000.1 | Thale cress | mitochondrion | 18.23 | 12.01 |
| AT5G08470.1 | Thale cress | cytosol | 18.71 | 10.27 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:18.12.1 | MapMan:19.2.6.2.1.1 | Gene3D:2.40.100.10 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like |
| Gene3D:3.40.50.300 | EntrezGene:841815 | InterPro:AAA+_ATPase | ProteinID:AEE32999.1 | ProteinID:ANM58624.1 | ArrayExpress:AT1G53780 |
| EnsemblPlantsGene:AT1G53780 | RefSeq:AT1G53780 | TAIR:AT1G53780 | RefSeq:AT1G53780-TAIR-G | EnsemblPlants:AT1G53780.2 | TAIR:AT1G53780.2 |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | Unigene:At.37335 | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase_dom | UniProt:F4HTC3 |
| GO:GO:0000166 | GO:GO:0000413 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016787 | GO:GO:0016853 | GO:GO:0019538 | GO:GO:0030163 | InterPro:IPR002130 | InterPro:IPR029000 |
| RefSeq:NP_001185216.1 | RefSeq:NP_001185217.1 | RefSeq:NP_001321046.1 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF00160 |
| PO:PO:0000293 | PO:PO:0009025 | PRINTS:PR00153 | ScanProsite:PS00674 | PFscan:PS50072 | PANTHER:PTHR23073 |
| PANTHER:PTHR23073:SF60 | SMART:SM00382 | SUPFAM:SSF50891 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | UniParc:UPI0001E92AEF |
Description
26S proteasome regulatory complex ATPase [Source:UniProtKB/TrEMBL;Acc:F4HTC3]
Coordinates
chr1:-:20073996..20077778
Molecular Weight (calculated)
69190.8 Da
IEP (calculated)
4.580
GRAVY (calculated)
-0.332
Length
620 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVFSDEIHA ELKHSNTGTV AMASFGENLN ASQFYITLCD DLDCLDGKYT VFGKITSGFE TLTCIAKASV DAKNRPNKDI RIRHTYILTD PFDDPPQLAK
101: MIPDASPKGK PKVEVTDDMQ PREDWDIRDA EFDFLELNEA FAEMAANPVE VAINSMIIRD IMEDPENEGP HNMRSDFEPL LSVLRLRDYE TGDIIEFDST
201: EASEEALSDI TEFGSTEASE AHFEQEPYSA RIKKVEKEIN ELAEKICNLG IKESDTGLAP PNQWDLVSDK QMMQEEQPLL VATCTQIISP NTEDAKYVVD
301: IKKIGKYVVG LGDKASPTDI EAGMRVGVDQ KKYQIQIPLP PKIDPSVTMM TVEEKPDATY SDIGGCKEQI EKIREVVELP MLHPEKFVRL GIDPPKGVLC
401: YGPPGSGKTL VARAVANRTG ACFIRVVGSE LVQKYIGEGA RMVRELFQMA RSKKACILFF DEIDAIGGAR FDDGVGSDNE VQRTMLEILY QLDGFDARGN
501: IKVLMATNRP DILDPALLRP GRLDRKVEFC LPDLEGRTQI FKIHTRTMSC ERDIRFELLA GLCPNSTGAD IRSVCIEAGM YAIGARRKSV TEKDFLDAVN
601: KVVKGYQKFS ATPKYMAYYI
101: MIPDASPKGK PKVEVTDDMQ PREDWDIRDA EFDFLELNEA FAEMAANPVE VAINSMIIRD IMEDPENEGP HNMRSDFEPL LSVLRLRDYE TGDIIEFDST
201: EASEEALSDI TEFGSTEASE AHFEQEPYSA RIKKVEKEIN ELAEKICNLG IKESDTGLAP PNQWDLVSDK QMMQEEQPLL VATCTQIISP NTEDAKYVVD
301: IKKIGKYVVG LGDKASPTDI EAGMRVGVDQ KKYQIQIPLP PKIDPSVTMM TVEEKPDATY SDIGGCKEQI EKIREVVELP MLHPEKFVRL GIDPPKGVLC
401: YGPPGSGKTL VARAVANRTG ACFIRVVGSE LVQKYIGEGA RMVRELFQMA RSKKACILFF DEIDAIGGAR FDDGVGSDNE VQRTMLEILY QLDGFDARGN
501: IKVLMATNRP DILDPALLRP GRLDRKVEFC LPDLEGRTQI FKIHTRTMSC ERDIRFELLA GLCPNSTGAD IRSVCIEAGM YAIGARRKSV TEKDFLDAVN
601: KVVKGYQKFS ATPKYMAYYI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.