Factsheet for PGSC0003DMT400006190

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P12250_001	Banana	cytosol	90.18	97.03
HORVU3Hr1G067470.2	Barley	cytosol	62.58	89.87
HORVU2Hr1G107280.1	Barley	cytosol	95.71	84.32
PGSC0003DMT400053010	Potato	cytosol	99.39	78.45
PGSC0003DMT400078301	Potato	cytosol	99.39	78.26
HORVU2Hr1G014000.1	Barley	cytosol	95.4	75.85
TraesCS2D01G083900.1	Wheat	golgi	95.71	75.18
TraesCS2A01G086400.1	Wheat	cytosol	95.71	75.18
TraesCS2B01G100400.1	Wheat	cytosol, plastid	95.4	74.94
TraesCS2D01G476000.1	Wheat	cytosol	95.71	74.82
TraesCS2B01G499600.1	Wheat	cytosol	95.71	74.82
KXG39890	Sorghum	cytosol	96.01	74.52
Os02t0325100-01	Rice	plastid	95.71	74.46
TraesCS2A01G475900.1	Wheat	cytosol	95.71	73.07
Zm00001d050616_P002	Maize	plastid	96.01	72.12
Zm00001d015886_P002	Maize	cytosol	80.37	48.34
PGSC0003DMT400051744	Potato	cytosol	52.76	38.74
PGSC0003DMT400040872	Potato	cytosol	52.76	38.74
PGSC0003DMT400079514	Potato	cytosol	43.56	35.68
PGSC0003DMT400023656	Potato	cytosol	44.79	34.11
PGSC0003DMT400063574	Potato	cytosol	44.17	34.04
PGSC0003DMT400012446	Potato	cytosol	44.79	34.03
PGSC0003DMT400038718	Potato	cytosol	41.1	30.95
PGSC0003DMT400018483	Potato	cytosol	31.9	25.37
PGSC0003DMT400072919	Potato	cytosol	33.74	18.0
PGSC0003DMT400031321	Potato	cytosol	33.74	13.66
PGSC0003DMT400050662	Potato	cytosol	33.74	13.66
PGSC0003DMT400055513	Potato	cytosol	33.74	13.63
PGSC0003DMT400027096	Potato	cytosol	33.74	13.61
PGSC0003DMT400046624	Potato	cytosol	33.74	13.58
PGSC0003DMT400015455	Potato	mitochondrion	30.67	13.11
PGSC0003DMT400046254	Potato	cytosol	31.29	12.41
PGSC0003DMT400013679	Potato	cytosol	30.37	10.65

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.3	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163
GO:GO:0036402	GO:GO:1901800	UniProt:M0ZQZ0	InterPro:P-loop_NTPase	PFAM:PF00004	EnsemblPlantsGene:PGSC0003DMG400002408
PGSC:PGSC0003DMG400002408	EnsemblPlants:PGSC0003DMT400006190	ScanProsite:PS00674	InterPro:PSMC4	PANTHER:PTHR23073	PANTHER:PTHR23073:SF8
SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI00029649BE	:	:

Description

26S protease regulatory subunit 6B homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400002408]

Coordinates

chr6:+:2750656..2754606

Molecular Weight (calculated)

36538.0 Da

IEP (calculated)

6.412

GRAVY (calculated)

-0.306

Length

326 amino acids

Sequence
(BLAST)

001: MEMIDQNNAI VGSTTGSNYY VRILSTINRE LLKPSASVAL HRHSNALVDV LPPEADSSIS LLSQLEKPDV TYNDIGGCDI QKQEIREAVE LPLTHHELYK
101: QIGIDPPRGV LLYGPPGTGK TMLAKAVAHH TTAAFIRVVG SEFVQKYLGE GPRMVRDVFR LAKENAPAII FIDEVDAIAT ARFDAQTGAD REVQRILMEL
201: LNQMDGFDQT VNVKVIMATN RADTLDPALL RPGRLDRKIE FPLPDRRQKR LVFQVCTAKM NLGDEVDLED YVSRPDKISA AEITAICQEA GMHAVRKNRY
301: VILPKDFEKG YRSNVKKPDT DFEFYK

Best Arabidopsis Sequence Match ( AT5G58290.1 )
(BLAST)

001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK

Arabidopsis Description

RPT3RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.