CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80862	Canola	cytosol, plastid	98.5	97.16
AT5G03340.1	Thale cress	cytosol	96.37	94.94
CDX73996	Canola	cytosol	95.24	93.94
CDY07941	Canola	cytosol	95.11	93.82
CDY41316	Canola	cytosol, extracellular	95.11	93.7
CDY22207	Canola	cytosol	94.99	93.58
CDY54618	Canola	cytosol	94.74	93.56
CDY41581	Canola	cytosol	94.36	93.19
VIT_08s0040g01480.t01	Wine grape	cytosol	92.98	92.06
PGSC0003DMT400031321	Potato	cytosol	92.11	91.3
Solyc06g074980.2.1	Tomato	nucleus	92.11	91.3
PGSC0003DMT400027096	Potato	cytosol	92.36	91.21
CDY13308	Canola	cytosol	92.48	91.11
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	92.23	91.09
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	92.23	90.98
Zm00001d048409_P001	Maize	cytosol	91.6	90.92
Zm00001d027707_P001	Maize	cytosol, plasma membrane	91.85	90.83
PGSC0003DMT400055513	Potato	cytosol	91.6	90.58
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	91.35	90.56
Zm00001d032859_P006	Maize	plasma membrane	91.85	90.49
PGSC0003DMT400050662	Potato	cytosol	91.23	90.43
Zm00001d014124_P001	Maize	cytosol, plasma membrane	91.85	90.38
GSMUA_Achr4P26800_001	Banana	cytosol	91.48	90.23
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	91.35	90.11
Solyc09g008070.2.1	Tomato	cytosol, unclear	90.48	89.36
CDX78154	Canola	cytosol	82.96	88.98
CDX73571	Canola	cytosol	82.08	88.16
GSMUA_Achr9P23550_001	Banana	mitochondrion	87.22	86.35
TraesCSU01G001000.1	Wheat	cytosol	86.72	86.18
VIT_06s0061g00340.t01	Wine grape	cytosol	80.33	83.79
TraesCS3B01G154400.1	Wheat	cytosol	82.33	83.38
TraesCS1B01G419200.1	Wheat	cytosol	82.21	83.14
HORVU0Hr1G006340.1	Barley	cytosol	81.95	82.99
TraesCS3B01G171400.1	Wheat	cytosol	75.44	82.81
TraesCS3B01G171200.1	Wheat	cytosol	81.7	82.74
TraesCS3A01G144500.1	Wheat	cytosol	55.26	82.74
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	20.18	82.56
TraesCS1B01G259200.1	Wheat	cytosol	81.58	82.51
TraesCS3A01G145100.1	Wheat	cytosol	81.58	82.51
TraesCS3B01G172100.1	Wheat	cytosol	81.45	82.28
TraesCS3B01G172000.1	Wheat	cytosol	80.83	82.27
EER95525	Sorghum	cytosol	80.08	81.92
TraesCS3A01G145000.1	Wheat	cytosol	71.43	81.9
KXG40206	Sorghum	cytosol	80.2	81.84
CDX67563	Canola	cytosol	90.1	81.8
HORVU3Hr1G029450.1	Barley	cytosol	81.95	80.94
HORVU3Hr1G029440.1	Barley	cytosol	81.95	80.34
TraesCS3B01G171300.1	Wheat	cytosol	73.18	80.11
TraesCS1A01G248500.1	Wheat	cytosol	59.4	79.4
TraesCS5B01G323100.1	Wheat	cytosol	57.64	79.17
Bra005733.1-P	Field mustard	cytosol	99.25	71.74
Zm00001d032117_P001	Maize	cytosol	27.69	69.06
CDY25624	Canola	cytosol	14.41	45.82
CDY20370	Canola	cytosol	12.66	37.55
CDY04161	Canola	cytosol	27.94	36.98
CDY39032	Canola	cytosol	11.53	36.65
CDX74308	Canola	mitochondrion	32.08	36.26
CDX71534	Canola	cytosol	17.29	34.59
CDY22373	Canola	cytosol	17.29	34.59
CDY02428	Canola	cytosol, extracellular	17.04	34.09
CDY25226	Canola	cytosol	17.04	34.09
CDX84794	Canola	cytosol	31.58	33.92
CDY23949	Canola	cytosol	30.7	33.79
CDX91939	Canola	cytosol, mitochondrion	32.21	33.08
CDX74842	Canola	cytosol	17.04	33.01
CDY30665	Canola	cytosol	17.54	32.86
CDY24076	Canola	cytosol	17.42	32.63
CDY36602	Canola	cytosol	17.42	32.63
CDY02494	Canola	cytosol	17.29	32.39
CDY25685	Canola	cytosol	17.29	32.39
CDY20470	Canola	cytosol, plasma membrane	17.17	32.16
CDY45794	Canola	nucleus	31.83	31.87
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	28.07	31.28
CDX88666	Canola	cytosol	15.41	30.45
CDY02806	Canola	cytosol	15.41	30.45
CDY32714	Canola	cytosol	15.41	30.45
CDY32995	Canola	cytosol, extracellular	15.41	30.45
CDY43865	Canola	cytosol	15.41	30.45
CDY58566	Canola	cytosol	15.41	30.45
CDY05176	Canola	cytosol	15.91	29.95
CDY18782	Canola	cytosol	15.91	29.95
CDY18801	Canola	cytosol	15.91	29.95
CDY27761	Canola	cytosol	15.91	29.95
CDY39033	Canola	cytosol	15.16	29.8
CDX74142	Canola	cytosol	15.79	29.72
CDY40714	Canola	cytosol	15.79	29.72
CDX89698	Canola	endoplasmic reticulum	25.56	29.35
CDY06847	Canola	cytosol	16.17	29.12
CDX92914	Canola	cytosol, extracellular	16.04	28.89
CDY35245	Canola	cytosol	16.04	28.89
CDY35832	Canola	cytosol	15.16	28.88
CDX70903	Canola	cytosol	15.04	28.85
CDX97472	Canola	cytosol	15.91	28.54
CDY14224	Canola	cytosol	15.91	28.54
CDY30663	Canola	cytosol	15.41	28.47
CDY08201	Canola	cytosol	12.66	28.45
CDX72118	Canola	plastid	33.46	28.28
CDY20371	Canola	cytosol, plastid	15.16	27.5
CDX89923	Canola	cytosol	25.31	26.44
CDY56774	Canola	plastid	33.21	26.03
CDY59958	Canola	cytosol	11.78	25.82
CDY32490	Canola	mitochondrion	28.45	24.49
CDY37450	Canola	mitochondrion	28.32	24.43
CDX88865	Canola	cytosol, extracellular	15.91	20.19
CDY02982	Canola	cytosol	28.82	19.51
CDY18139	Canola	extracellular, vacuole	7.27	19.14
CDX69950	Canola	cytosol	26.19	19.14
CDY62119	Canola	cytosol	26.19	19.14
CDY42324	Canola	cytosol, extracellular	15.91	17.71
CDY44958	Canola	cytosol, plasma membrane	15.91	17.61
CDY69655	Canola	cytosol, nucleus	1.0	3.52

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	GO:A0A078FE76
UniProt:A0A078FE76	InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf
InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	EnsemblPlants:CDY11249	ProteinID:CDY11249	ProteinID:CDY11249.1	InterPro:Cdc48_dom2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00049274001	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692
SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	UniParc:UPI0004EF423D	SEG:seg	:

Description

BnaA03g00850DBnaA03g00850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FE76]

Coordinates

chrLK032010:-:367301..370129

Molecular Weight (calculated)

88398.3 Da

IEP (calculated)

4.927

GRAVY (calculated)

-0.348

Length

798 amino acids

Sequence
(BLAST)

001: MSNQPESSDS KSKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPNAM EKLQLFRGDT ILIKGKKRKD TVCIALADDS CEEPKIRMNK VVRSNLRVRL
101: GDVVSVHQCP DVKYGTRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPIKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK MAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKRDKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDESI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG SSVGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDPALLRPG RLDQLIYIPL PDEESRLSIF KACLRKSPVA KDVDVRALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI EREHLVDDEV AEIRAAHFEE SMKYARRSVS DADIRKYQAF AQTLQQSRGI GSEFRFDPTA AAGRATGGAS ADPFATSAAA ADDDDLYS

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.