Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 4
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89923 | Canola | cytosol | 79.87 | 31.68 |
| CDY37450 | Canola | mitochondrion | 81.85 | 26.81 |
| CDY32490 | Canola | mitochondrion | 81.19 | 26.54 |
| HORVU3Hr1G029660.1 | Barley | cytosol, peroxisome | 2.64 | 23.53 |
| Zm00001d033491_P001 | Maize | cytosol, plasma membrane, plastid | 14.52 | 17.39 |
| CDY04161 | Canola | cytosol | 16.17 | 8.13 |
| CDY11249 | Canola | cytosol | 19.14 | 7.27 |
| CDY54618 | Canola | cytosol | 19.14 | 7.18 |
| CDY41581 | Canola | cytosol | 19.14 | 7.18 |
| CDX73996 | Canola | cytosol | 19.14 | 7.17 |
| CDX80862 | Canola | cytosol, plastid | 19.14 | 7.17 |
| CDY07941 | Canola | cytosol | 19.14 | 7.17 |
| CDY22207 | Canola | cytosol | 19.14 | 7.16 |
| CDY41316 | Canola | cytosol, extracellular | 19.14 | 7.16 |
| CDY13308 | Canola | cytosol | 19.14 | 7.16 |
| CDX78154 | Canola | cytosol | 17.16 | 6.99 |
| CDX73571 | Canola | cytosol | 16.83 | 6.86 |
| CDY33111 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 15.84 | 6.7 |
| CDX74308 | Canola | mitochondrion | 15.51 | 6.66 |
| CDX67563 | Canola | cytosol | 18.81 | 6.48 |
| CDY45794 | Canola | nucleus | 16.5 | 6.27 |
| CDY23949 | Canola | cytosol | 14.52 | 6.07 |
| CDX84794 | Canola | cytosol | 14.52 | 5.92 |
| CDX91939 | Canola | cytosol, mitochondrion | 14.85 | 5.79 |
| CDX72118 | Canola | plastid | 17.49 | 5.61 |
| CDY56774 | Canola | plastid | 17.49 | 5.21 |
| CDX92914 | Canola | cytosol, extracellular | 6.93 | 4.74 |
| CDY35245 | Canola | cytosol | 6.93 | 4.74 |
| CDY06847 | Canola | cytosol | 6.93 | 4.74 |
| CDX97472 | Canola | cytosol | 6.93 | 4.72 |
| CDY14224 | Canola | cytosol | 6.93 | 4.72 |
| CDX74142 | Canola | cytosol | 6.27 | 4.48 |
| CDY27761 | Canola | cytosol | 6.27 | 4.48 |
| CDY40714 | Canola | cytosol | 6.27 | 4.48 |
| CDY18801 | Canola | cytosol | 6.27 | 4.48 |
| CDY18782 | Canola | cytosol | 6.27 | 4.48 |
| CDY05176 | Canola | cytosol | 6.27 | 4.48 |
| CDX89698 | Canola | endoplasmic reticulum | 10.23 | 4.46 |
| CDY30663 | Canola | cytosol | 6.27 | 4.4 |
| CDY25685 | Canola | cytosol | 5.94 | 4.23 |
| CDY02494 | Canola | cytosol | 5.94 | 4.23 |
| CDY22373 | Canola | cytosol | 5.28 | 4.01 |
| CDY25226 | Canola | cytosol | 5.28 | 4.01 |
| CDX71534 | Canola | cytosol | 5.28 | 4.01 |
| CDY02428 | Canola | cytosol, extracellular | 5.28 | 4.01 |
| CDY20470 | Canola | cytosol, plasma membrane | 5.61 | 3.99 |
| CDY24076 | Canola | cytosol | 5.61 | 3.99 |
| CDY30665 | Canola | cytosol | 5.61 | 3.99 |
| CDY36602 | Canola | cytosol | 5.61 | 3.99 |
| CDY62119 | Canola | cytosol | 14.19 | 3.94 |
| CDX69950 | Canola | cytosol | 13.86 | 3.85 |
| CDY39033 | Canola | cytosol | 4.95 | 3.69 |
| CDY02982 | Canola | cytosol | 14.19 | 3.65 |
| CDX74842 | Canola | cytosol | 4.95 | 3.64 |
| CDY25624 | Canola | cytosol | 2.97 | 3.59 |
| HORVU6Hr1G049800.1 | Barley | cytosol | 0.66 | 3.57 |
| CDY20371 | Canola | cytosol, plastid | 4.95 | 3.41 |
| CDY08201 | Canola | cytosol | 3.96 | 3.38 |
| CDX70903 | Canola | cytosol | 4.62 | 3.37 |
| CDY35832 | Canola | cytosol | 4.62 | 3.34 |
| CDY59958 | Canola | cytosol | 3.96 | 3.3 |
| CDY20370 | Canola | cytosol | 2.64 | 2.97 |
| CDY39032 | Canola | cytosol | 1.98 | 2.39 |
| CDX88865 | Canola | cytosol, extracellular | 4.62 | 2.23 |
| CDY43865 | Canola | cytosol | 2.64 | 1.98 |
| CDX88666 | Canola | cytosol | 2.64 | 1.98 |
| CDY58566 | Canola | cytosol | 2.64 | 1.98 |
| CDY02806 | Canola | cytosol | 2.64 | 1.98 |
| CDY32714 | Canola | cytosol | 2.64 | 1.98 |
| CDY32995 | Canola | cytosol, extracellular | 2.64 | 1.98 |
| CDY42324 | Canola | cytosol, extracellular | 4.62 | 1.95 |
| CDY44958 | Canola | cytosol, plasma membrane | 4.62 | 1.94 |
| Os08t0556550-01 | Rice | cytosol | 0.66 | 1.87 |
| CDY69655 | Canola | cytosol, nucleus | 0.0 | 0.0 |
| Os08t0556400-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY18139 | EnsemblPlantsGene:GSBRNA2T00002661001 | Gene3D:3.40.50.300 | GO:A0A078FYD6 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:ATPase_AAA_core | InterPro:P-loop_NTPase | PANTHER:PTHR23077 | PANTHER:PTHR23077:SF9 |
| PFAM:PF00004 | ProteinID:CDY18139 | ProteinID:CDY18139.1 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52540 |
| UniParc:UPI0004EEE0D2 | UniProt:A0A078FYD6 | MapMan:23.4.1.5.1.2 | : | : | : |
Description
BnaC05g01620DBnaC05g01620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYD6]
Coordinates
chrLK032083:-:39541..42108
Molecular Weight (calculated)
33651.6 Da
IEP (calculated)
8.679
GRAVY (calculated)
-0.084
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLLSFWTLS IQCLGSNICI QCSQRLCSRS EDFIYFKVIA MEPSNERFLR VNHYQTALVL GGTVSSGLPP DLLVSRSKVP MPLQEDAVNV LASVLSPPLC
101: PSALSSKLRV AVLLHGLPGC GKRTVVNYVA RRLGLHVVEY SCHSLLASSE RKTSTALAQT FNMARRFRPT ILLLRHFDVF KNLGSQDGSQ GDRVGVASEI
201: ASVIRELTEP VSNGEYSSME EESNDNSVNE VGKFRGHQVR CFSHEIRMSS LNDEQRSEML SQSLQGLELR FRGVSSRRRS RFCCCRVCGF YKGDGSAFAI
301: TIP
101: PSALSSKLRV AVLLHGLPGC GKRTVVNYVA RRLGLHVVEY SCHSLLASSE RKTSTALAQT FNMARRFRPT ILLLRHFDVF KNLGSQDGSQ GDRVGVASEI
201: ASVIRELTEP VSNGEYSSME EESNDNSVNE VGKFRGHQVR CFSHEIRMSS LNDEQRSEML SQSLQGLELR FRGVSSRRRS RFCCCRVCGF YKGDGSAFAI
301: TIP
001: MVERRNPLVL SSTRSTLRSV LNSSQPSSAD GDRVLNKDGD LLRGNARLSA GILRWRKDGE NVSDAKLDSL DDSALVGLST QLLKRLSINS GSLVVVKNIE
101: IGIQRVAQVV VLDPPKTTLE DASLTQVPVS DSLHTMLVFP TYDLMGQQLL DQEVAYLSPM LAFNLSLHIS CLKSLVHRGN GVLEKYFEAK CDEEFIGKSA
201: EDGSKIGLDL EPVSQVPGYA SHLRVSFVKI PECGTIPSLK VNSSFEAEER QGLIDSALQK YFGTDRQLSR GDIFRIYIDW NCGSSICNPC SQRLCSESDD
301: YIYFKVIAME PSNERFLRVN HSQTALVLGG TVSSGLPPDL LVYRSKVPMP LQEETVNILA SVLSPPLCPS ALASKLRVAV LLHGIPGCGK RTVVKYVARR
401: LGLHVVEFSC HSLLASSERK TSTALAQTFN MARRYSPTIL LLRHFDVFKN LGSQDGSLGD RVGVSFEIAS VIRELTEPVS NGDSSMEEKS NSNFSENEVG
501: KFRGHQVLLI ASAESTEGIS PTIRRCFSHE IRMGSLNDEQ RSEMLSQSLQ GVSQFLNISS DEFMKGLVGQ TSGFLPRDLQ ALVADAGANL YISQESETKK
601: INSLSDDLHG VDIHQASQID NSTEKLTAKE DFTKALDRSK KRNASALGAP KVPNVKWDDV GGLEDVKTSI LDTVQLPLLH KDLFSSGLRK RSGVLLYGPP
701: GTGKTLLAKA VATECSLNFL SVKGPELINM YIGESEKNVR DIFEKARSAR PCVIFFDELD SLAPARGASG DSGGVMDRVV SQMLAEIDGL SDSSQDLFII
801: GASNRPDLID PALLRPGRFD KLLYVGVNAD ASYRERVLKA LTRKFKLSED VSLYSVAKKC PSTFTGADMY ALCADAWFQA AKRKVSKSDS GDMPTEEDDP
901: DSVVVEYVDF IKAMDQLSPS LSITELKKYE MLRDQFQGRS S
101: IGIQRVAQVV VLDPPKTTLE DASLTQVPVS DSLHTMLVFP TYDLMGQQLL DQEVAYLSPM LAFNLSLHIS CLKSLVHRGN GVLEKYFEAK CDEEFIGKSA
201: EDGSKIGLDL EPVSQVPGYA SHLRVSFVKI PECGTIPSLK VNSSFEAEER QGLIDSALQK YFGTDRQLSR GDIFRIYIDW NCGSSICNPC SQRLCSESDD
301: YIYFKVIAME PSNERFLRVN HSQTALVLGG TVSSGLPPDL LVYRSKVPMP LQEETVNILA SVLSPPLCPS ALASKLRVAV LLHGIPGCGK RTVVKYVARR
401: LGLHVVEFSC HSLLASSERK TSTALAQTFN MARRYSPTIL LLRHFDVFKN LGSQDGSLGD RVGVSFEIAS VIRELTEPVS NGDSSMEEKS NSNFSENEVG
501: KFRGHQVLLI ASAESTEGIS PTIRRCFSHE IRMGSLNDEQ RSEMLSQSLQ GVSQFLNISS DEFMKGLVGQ TSGFLPRDLQ ALVADAGANL YISQESETKK
601: INSLSDDLHG VDIHQASQID NSTEKLTAKE DFTKALDRSK KRNASALGAP KVPNVKWDDV GGLEDVKTSI LDTVQLPLLH KDLFSSGLRK RSGVLLYGPP
701: GTGKTLLAKA VATECSLNFL SVKGPELINM YIGESEKNVR DIFEKARSAR PCVIFFDELD SLAPARGASG DSGGVMDRVV SQMLAEIDGL SDSSQDLFII
801: GASNRPDLID PALLRPGRFD KLLYVGVNAD ASYRERVLKA LTRKFKLSED VSLYSVAKKC PSTFTGADMY ALCADAWFQA AKRKVSKSDS GDMPTEEDDP
901: DSVVVEYVDF IKAMDQLSPS LSITELKKYE MLRDQFQGRS S
Arabidopsis Description
PEX6Peroxisome biogenesis protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY16]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.