CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83563
CDY04184
CDY13593
CDY24500
CDY31596
CDY33613
CDY39183
CDY55064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05530.1	CDY24500	AT1G59900.1	24846764
AT3G05530.1	CDY31596	AT1G59900.1	24846764
AT3G05530.1	CDY33613	AT1G59900.1	24846764
AT3G05530.1	CDY55064	AT1G59900.1	24846764
AT3G05530.1	CDX83563	AT3G25860.1	24846764
AT3G05530.1	CDY04184	AT3G25860.1	24846764
AT3G05530.1	CDY13593	AT3G25860.1	24846764
AT3G05530.1	CDY39183	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039431.1-P	Field mustard	cytosol	100.0	100.0
CDY05176	Canola	cytosol	100.0	100.0
AT3G05530.1	Thale cress	cytosol	99.76	99.76
CDX74142	Canola	cytosol	99.76	99.76
CDY18782	Canola	cytosol	99.76	99.76
CDY18801	Canola	cytosol	99.76	99.76
CDY40714	Canola	cytosol	99.76	99.76
VIT_14s0060g02260.t01	Wine grape	cytosol	92.22	96.54
KRG92899	Soybean	cytosol, nucleus	95.05	95.27
KRH33891	Soybean	endoplasmic reticulum, nucleus	94.81	95.04
Solyc01g099760.2.1	Tomato	nucleus, plastid	94.58	94.8
PGSC0003DMT400063574	Potato	cytosol	94.58	94.8
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	85.85	94.79
GSMUA_Achr9P13230_001	Banana	cytosol	90.33	94.57
VIT_05s0020g01180.t01	Wine grape	cytosol	94.34	94.56
GSMUA_Achr5P04520_001	Banana	cytosol	89.39	93.58
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	93.4	92.31
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	93.16	91.86
Os02t0803700-01	Rice	cytosol, nucleus, plastid	92.92	91.84
EER87942	Sorghum	cytosol	92.92	91.63
Zm00001d045163_P001	Maize	mitochondrion	37.97	91.48
KXG31298	Sorghum	cytosol	92.22	91.36
KRH68501	Soybean	nucleus	90.57	90.35
TraesCS3A01G421900.1	Wheat	cytosol	92.45	90.32
TraesCS3B01G457100.1	Wheat	cytosol, golgi	92.45	90.32
TraesCS3D01G417000.1	Wheat	cytosol	92.22	90.09
TraesCS7B01G036400.1	Wheat	cytosol	89.15	88.52
TraesCS7D01G134800.1	Wheat	cytosol	88.44	87.41
Zm00001d018409_P007	Maize	cytosol	90.09	85.27
KRG96790	Soybean	mitochondrion	66.27	84.64
CDY20370	Canola	cytosol	27.59	43.49
CDX70903	Canola	cytosol	40.33	41.11
CDY39032	Canola	cytosol	24.29	41.04
CDY35832	Canola	cytosol	40.09	40.57
CDY06847	Canola	cytosol	41.98	40.18
CDY35245	Canola	cytosol	41.75	39.95
CDX92914	Canola	cytosol, extracellular	41.75	39.95
CDY14224	Canola	cytosol	41.75	39.78
CDX97472	Canola	cytosol	41.75	39.78
CDX74842	Canola	cytosol	38.44	39.56
CDY08201	Canola	cytosol	32.78	39.15
CDY43865	Canola	cytosol	37.26	39.11
CDY58566	Canola	cytosol	37.26	39.11
CDY32995	Canola	cytosol, extracellular	37.26	39.11
CDY32714	Canola	cytosol	37.26	39.11
CDX88666	Canola	cytosol	37.26	39.11
CDY02806	Canola	cytosol	37.26	39.11
CDY25685	Canola	cytosol	38.92	38.73
CDY30665	Canola	cytosol	38.92	38.73
CDY24076	Canola	cytosol	38.92	38.73
CDY20470	Canola	cytosol, plasma membrane	38.92	38.73
CDY36602	Canola	cytosol	38.92	38.73
CDY02494	Canola	cytosol	38.92	38.73
CDY25226	Canola	cytosol	36.08	38.35
CDY22373	Canola	cytosol	36.08	38.35
CDX71534	Canola	cytosol	36.08	38.35
CDY02428	Canola	cytosol, extracellular	35.85	38.1
CDY59958	Canola	cytosol	30.42	35.44
CDY30663	Canola	cytosol	36.08	35.42
CDY39033	Canola	cytosol	32.78	34.24
CDY20371	Canola	cytosol, plastid	31.84	30.68
CDY25624	Canola	cytosol	17.69	29.88
CDX88865	Canola	cytosol, extracellular	39.62	26.71
CDY44958	Canola	cytosol, plasma membrane	40.33	23.72
CDY42324	Canola	cytosol, extracellular	40.09	23.71
CDY04161	Canola	cytosol	26.89	18.91
CDY13308	Canola	cytosol	30.66	16.05
CDY11249	Canola	cytosol	29.95	15.91
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.65	15.78
CDX80862	Canola	cytosol, plastid	29.72	15.57
CDY07941	Canola	cytosol	29.25	15.33
CDX73996	Canola	cytosol	29.25	15.33
CDY41316	Canola	cytosol, extracellular	29.25	15.31
CDY22207	Canola	cytosol	29.25	15.31
CDY41581	Canola	cytosol	29.01	15.22
CDY54618	Canola	cytosol	29.01	15.22
CDX74308	Canola	mitochondrion	25.0	15.01
CDX67563	Canola	cytosol	30.42	14.68
CDX78154	Canola	cytosol	25.24	14.38
CDX73571	Canola	cytosol	25.0	14.27
CDY23949	Canola	cytosol	23.82	13.93
CDX89923	Canola	cytosol	25.0	13.87
CDX84794	Canola	cytosol	24.29	13.86
CDX91939	Canola	cytosol, mitochondrion	24.76	13.51
CDY45794	Canola	nucleus	24.53	13.05
CDX89698	Canola	endoplasmic reticulum	20.75	12.66
CDY32490	Canola	mitochondrion	26.89	12.3
CDY37450	Canola	mitochondrion	26.65	12.22
CDX72118	Canola	plastid	26.89	12.08
CDY56774	Canola	plastid	27.36	11.39
CDY02982	Canola	cytosol	27.36	9.84
CDY62119	Canola	cytosol	23.82	9.25
CDX69950	Canola	cytosol	23.35	9.07
CDY18139	Canola	extracellular, vacuole	4.48	6.27
CDY69655	Canola	cytosol, nucleus	0.47	0.88

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.5	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	GO:A0A078GQS1
UniProt:A0A078GQS1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlants:CDY27761	ProteinID:CDY27761
ProteinID:CDY27761.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163
GO:GO:0036402	GO:GO:1901800	EnsemblPlantsGene:GSBRNA2T00038566001	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
InterPro:PSMC3	PANTHER:PTHR23073	PANTHER:PTHR23073:SF7	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242
UniParc:UPI00000A229F	SEG:seg	:	:	:	:

Description

BnaA05g31700DBnaA05g31700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQS1]

Coordinates

chrLK032209:-:320875..323414

Molecular Weight (calculated)

47480.8 Da

IEP (calculated)

4.651

GRAVY (calculated)

-0.430

Length

424 amino acids

Sequence
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDIVRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Arabidopsis Description

RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.