Factsheet for GSMUA_Achr5P04520_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P18330_001
GSMUA_Achr3P07350_001
GSMUA_Achr7P05520_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05530.1	GSMUA_Achr1P18330_001	AT1G59900.1	24846764
AT3G05530.1	GSMUA_Achr7P05520_001	AT1G59900.1	24846764
AT3G05530.1	GSMUA_Achr3P07350_001	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P13230_001	Banana	cytosol	96.79	96.79
VIT_14s0060g02260.t01	Wine grape	cytosol	95.56	95.56
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	89.63	94.53
VIT_05s0020g01180.t01	Wine grape	cytosol	97.04	92.91
KRG92899	Soybean	cytosol, nucleus	96.05	91.96
KRH33891	Soybean	endoplasmic reticulum, nucleus	95.8	91.73
Solyc01g099760.2.1	Tomato	nucleus, plastid	95.56	91.49
PGSC0003DMT400063574	Potato	cytosol	95.56	91.49
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	96.54	90.93
EER87942	Sorghum	cytosol	96.54	90.93
KXG31298	Sorghum	cytosol	95.56	90.42
Os02t0803700-01	Rice	cytosol, nucleus, plastid	95.56	90.21
Bra001152.1-P	Field mustard	cytosol	93.83	89.62
CDY40714	Canola	cytosol	93.83	89.62
CDX74142	Canola	cytosol	93.83	89.62
AT3G05530.1	Thale cress	cytosol	93.58	89.39
CDY05176	Canola	cytosol	93.58	89.39
CDY27761	Canola	cytosol	93.58	89.39
Bra039431.1-P	Field mustard	cytosol	93.58	89.39
CDY18801	Canola	cytosol	93.33	89.15
Bra040214.1-P	Field mustard	cytosol	93.33	89.15
CDY18782	Canola	cytosol	93.33	89.15
TraesCS7B01G036400.1	Wheat	cytosol	92.1	87.35
TraesCS3A01G421900.1	Wheat	cytosol	93.58	87.33
TraesCS3B01G457100.1	Wheat	cytosol, golgi	93.58	87.33
TraesCS3D01G417000.1	Wheat	cytosol	93.33	87.1
TraesCS7D01G134800.1	Wheat	cytosol	91.85	86.71
KRH68501	Soybean	nucleus	90.86	86.59
GSMUA_Achr3P04570_001	Banana	cytosol	89.38	85.58
Zm00001d018409_P007	Maize	cytosol	92.84	83.93
KRG96790	Soybean	mitochondrion	67.16	81.93
GSMUA_AchrUn_...	Banana	cytosol	21.98	50.0
GSMUA_Achr6P12250_001	Banana	cytosol	34.57	46.2
GSMUA_Achr11P...	Banana	cytosol	35.06	43.56
GSMUA_Achr7P09950_001	Banana	cytosol	41.73	41.94
GSMUA_Achr4P05840_001	Banana	cytosol	41.98	40.38
GSMUA_Achr10P...	Banana	cytosol	41.73	40.24
GSMUA_Achr4P05850_001	Banana	cytosol	41.98	40.09
GSMUA_AchrUn_...	Banana	cytosol	39.01	39.4
GSMUA_Achr4P03720_001	Banana	cytosol	38.27	38.94
GSMUA_Achr8P16830_001	Banana	cytosol	40.49	38.59
GSMUA_AchrUn_...	Banana	cytosol	40.49	38.59
GSMUA_Achr7P17620_001	Banana	cytosol	39.01	38.54
GSMUA_Achr7P21960_001	Banana	cytosol	38.02	31.82
GSMUA_Achr5P13290_001	Banana	cytosol	13.09	24.09
GSMUA_Achr3P00250_001	Banana	cytosol	10.12	20.92
GSMUA_Achr6P11080_001	Banana	plastid	30.86	20.87
GSMUA_Achr6P29120_001	Banana	cytosol	28.89	19.5
GSMUA_Achr7P04540_001	Banana	cytosol	29.63	15.19
GSMUA_Achr4P26800_001	Banana	cytosol	29.63	14.83
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	29.38	14.71
GSMUA_Achr9P23550_001	Banana	mitochondrion	28.89	14.52
GSMUA_Achr4P03560_001	Banana	mitochondrion	26.91	13.94
GSMUA_Achr3P00260_001	Banana	cytosol	14.32	11.89
GSMUA_Achr6P20030_001	Banana	cytosol	26.91	11.28
GSMUA_Achr11P...	Banana	cytosol	24.69	8.92

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.5	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0030163	GO:GO:0036402	GO:GO:1901800	EnsemblPlantsGene:GSMUA_Achr5G04520_001	EnsemblPlants:GSMUA_Achr5P04520_001	EnsemblPlants:GSMUA_Achr5T04520_001
UniProt:M0SVN1	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC3	PANTHER:PTHR23073
PANTHER:PTHR23073:SF7	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI000294E08A	SEG:seg

Description

26S protease regulatory subunit 6A homolog [Source:GMGC_GENE;Acc:GSMUA_Achr5G04520_001]

Coordinates

chr5:+:3331089..3342744

Molecular Weight (calculated)

45337.4 Da

IEP (calculated)

4.947

GRAVY (calculated)

-0.407

Length

405 amino acids

Sequence
(BLAST)

001: MSTDDIIRAS RLLDNEIRIL KDELHRTNLD LESLKEKIKE NQEKIKLNKQ LPYLVGNIVE ILEMNPEEEA EEDGANVDLD SQRKGKCVVL KTSTRQTIFL
101: PVVGLVDPDK LKPGDLVGVN KDSYLILDTL PSEYDSRVKA MEVDEKPTED YNDIGGLEKQ IQELVEAIVL PMSHKDRFQK LGIRPPKGVL LYGPPGTGKT
201: LMARACAAQT NATFLKLAGP QLVQMFIGDG AKLVRDAFQL AKEKSPCIIF IDEIDAIGTK RFDSEVSGDR EVQRTMLELL NQLDGFSSDD SIKVIAATNR
301: ADILDPALVR SGRLDRKIEF PHPSEEARAR ILQIHSRKMN VHPDVNFEEL ARSTDDFNGA QLKAVCVEAG MLALRRDATE VTHEDFNEGI IQVQAKKKSS
401: LNYYA

Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Arabidopsis Description

RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.