CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95283
KRG99219
KRH45768
KRH69435
KRH74712

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09100.1	KRG95283	AT1G59900.1	24846764
AT1G09100.1	KRG99219	AT1G59900.1	24846764
AT1G09100.1	KRH45768	AT1G59900.1	24846764
AT1G09100.1	KRH69435	AT1G59900.1	24846764
AT1G09100.1	KRH74712	AT1G59900.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045163_P001	Maize	mitochondrion	38.55	72.73
KRH68501	Soybean	nucleus	87.65	68.47
KRH33891	Soybean	endoplasmic reticulum, nucleus	87.05	68.32
KRG92899	Soybean	cytosol, nucleus	87.05	68.32
GSMUA_Achr9P13230_001	Banana	cytosol	83.13	68.15
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	78.01	67.45
VIT_05s0020g01180.t01	Wine grape	cytosol	85.84	67.38
GSMUA_Achr5P04520_001	Banana	cytosol	81.93	67.16
Bra040214.1-P	Field mustard	cytosol	84.94	66.51
CDY18782	Canola	cytosol	84.94	66.51
CDY18801	Canola	cytosol	84.94	66.51
Bra001152.1-P	Field mustard	cytosol	84.64	66.27
CDY40714	Canola	cytosol	84.64	66.27
CDY27761	Canola	cytosol	84.64	66.27
Bra039431.1-P	Field mustard	cytosol	84.64	66.27
CDX74142	Canola	cytosol	84.64	66.27
CDY05176	Canola	cytosol	84.64	66.27
Solyc01g099760.2.1	Tomato	nucleus, plastid	84.34	66.19
PGSC0003DMT400063574	Potato	cytosol	84.34	66.19
AT1G09100.1	Thale cress	cytosol	83.43	65.48
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	83.73	64.8
KXG31298	Sorghum	cytosol	83.43	64.72
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	83.73	64.65
Os02t0803700-01	Rice	cytosol, nucleus, plastid	83.43	64.57
EER87942	Sorghum	cytosol	83.43	64.42
TraesCS3A01G421900.1	Wheat	cytosol	81.93	62.67
TraesCS3B01G457100.1	Wheat	cytosol, golgi	81.93	62.67
TraesCS3D01G417000.1	Wheat	cytosol	81.63	62.44
TraesCS7B01G036400.1	Wheat	cytosol	79.82	62.06
TraesCS7D01G134800.1	Wheat	cytosol	80.12	62.0
Zm00001d018409_P007	Maize	cytosol	81.02	60.04
KRH06953	Soybean	cytosol	25.3	31.11
KRH45565	Soybean	endoplasmic reticulum	18.67	30.39
KRH19693	Soybean	cytosol	39.76	29.8
KRH32292	Soybean	cytosol, nucleus	39.76	29.8
KRH67524	Soybean	nucleus	39.76	29.6
KRG95799	Soybean	cytosol, nucleus	39.76	29.6
KRH51796	Soybean	cytosol	35.24	29.4
KRH61120	Soybean	endoplasmic reticulum	35.24	29.4
KRH05868	Soybean	cytosol, nucleus	35.24	29.32
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	35.24	29.32
KRH00031	Soybean	plastid	29.22	28.12
KRH44668	Soybean	cytosol, mitochondrion, nucleus	35.24	27.99
KRH46990	Soybean	nucleus	35.24	27.99
KRH69005	Soybean	nucleus	34.94	27.23
KRG97280	Soybean	cytosol, nucleus	34.94	27.23
KRH47728	Soybean	cytosol, nucleus	34.94	27.23
KRH06311	Soybean	cytosol	34.94	27.23
KRG99061	Soybean	cytosol	15.96	26.5
KRH30674	Soybean	cytosol, nucleus	32.83	26.39
KRH30673	Soybean	cytosol, nucleus	33.43	26.24
KRG98107	Soybean	cytosol	33.13	26.07
KRH51488	Soybean	mitochondrion	31.33	24.59
KRG94277	Soybean	cytosol	14.16	22.71
KRH45638	Soybean	cytosol	15.96	16.51
KRH70928	Soybean	cytosol	24.1	13.2
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	25.0	11.46
KRH67721	Soybean	endoplasmic reticulum, nucleus	27.71	11.39
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	27.41	11.26
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	27.11	11.1
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	27.11	11.07
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	26.81	10.93
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	26.51	10.9
KRH44049	Soybean	nucleus	25.9	10.87
KRH63585	Soybean	endoplasmic reticulum	26.51	10.81
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	26.2	10.78
KRH10420	Soybean	mitochondrion	15.96	10.71
KRH30601	Soybean	cytosol	25.9	10.67
KRG96401	Soybean	mitochondrion	25.0	9.03
KRH68139	Soybean	cytosol	17.47	8.66
KRH66707	Soybean	plastid	25.0	7.93
KRH50491	Soybean	cytosol	21.08	6.19
KRG95054	Soybean	plastid	10.84	4.67

Protein Annotations

Gene3D:1.10.8.60	Gene3D:2.40.50.140	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0ES83	InterPro:AAA+_ATPase
EMBL:ACUP02012163	InterPro:ATPase_AAA_core	ncoils:Coil	EnsemblPlantsGene:GLYMA_19G232900	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0036402	GO:GO:1901800	EnsemblPlants:KRG96790
ProteinID:KRG96790	ProteinID:KRG96790.1	InterPro:P-loop_NTPase	PFAM:PF00004	InterPro:PSMC3	PANTHER:PTHR23073
PANTHER:PTHR23073:SF7	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0006EE1333	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:-:48296003..48298854

Molecular Weight (calculated)

37485.2 Da

IEP (calculated)

6.529

GRAVY (calculated)

-0.452

Length

332 amino acids

Sequence
(BLAST)

001: MASAMLVGVY DHRRRRQRLR ASRMLENGIR ILKEEVQRSN REWESYKEKI KNNEEKVKLH KQLPYLVANI VEILDMNPED EAEEDGANID LDSQRKGKCV
101: VLKTSTRQTI FLLVVGLVDP DKLKPGYLAG AMEVDEKPTE DYNDIGGLEK QIQEWVETIV LPITHKERFQ KFGVGPPKGV LLYGPPGTGK TLIARACAAQ
201: TNATFLKLAA KLVRDAFQLA KEKSPCIIFM DEIDAIGTKR FDSEVSGDRE LQRTMLELLN QLDGFSSDDR VKIHSRKMNV HPDVNAAQLK AVCVEAGMLA
301: LCRDATEVNH EDFDEGIIQV QAKKKASLDY YA

Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Arabidopsis Description

RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.