CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 25806999
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	97.54	97.54
VIT_17s0000g08890.t01	Wine grape	cytosol	93.12	93.12
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	89.68	90.46
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	89.56	90.33
KRH67721	Soybean	endoplasmic reticulum, nucleus	89.07	89.73
GSMUA_Achr7P04540_001	Banana	cytosol	86.98	89.62
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	88.7	89.36
PGSC0003DMT400046624	Potato	cytosol	88.7	89.14
KRG99061	Soybean	cytosol	21.87	89.0
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	87.96	88.29
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	88.08	88.19
KRH30601	Soybean	cytosol	86.86	87.72
KRG94277	Soybean	cytosol	22.24	87.44
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	88.33	86.52
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	74.82	84.12
KRH45638	Soybean	cytosol	26.29	66.67
KRH70928	Soybean	cytosol	27.15	36.47
KRH61120	Soybean	endoplasmic reticulum	16.83	34.42
KRH51796	Soybean	cytosol	16.83	34.42
KRH05868	Soybean	cytosol, nucleus	16.83	34.34
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	16.83	34.34
KRH06311	Soybean	cytosol	17.44	33.33
KRG97280	Soybean	cytosol, nucleus	17.44	33.33
KRH47728	Soybean	cytosol, nucleus	17.44	33.33
KRH69005	Soybean	nucleus	17.44	33.33
KRH44049	Soybean	nucleus	32.31	33.25
KRH30674	Soybean	cytosol, nucleus	15.36	30.27
KRG98107	Soybean	cytosol	15.6	30.09
KRH33891	Soybean	endoplasmic reticulum, nucleus	15.6	30.02
KRG92899	Soybean	cytosol, nucleus	15.6	30.02
KRH30673	Soybean	cytosol, nucleus	15.6	30.02
KRH44668	Soybean	cytosol, mitochondrion, nucleus	15.36	29.9
KRH46990	Soybean	nucleus	15.36	29.9
KRG95799	Soybean	cytosol, nucleus	16.09	29.37
KRH67524	Soybean	nucleus	16.09	29.37
KRH06953	Soybean	cytosol	9.71	29.26
KRH32292	Soybean	cytosol, nucleus	15.85	29.12
KRH19693	Soybean	cytosol	15.85	29.12
KRH68501	Soybean	nucleus	14.99	28.71
KRH45565	Soybean	endoplasmic reticulum	7.13	28.43
KRH10420	Soybean	mitochondrion	16.46	27.07
KRH51488	Soybean	mitochondrion	14.0	26.95
KRH66707	Soybean	plastid	34.15	26.58
KRG96790	Soybean	mitochondrion	10.81	26.51
KRG95054	Soybean	plastid	23.71	25.03
KRG96401	Soybean	mitochondrion	27.15	24.05
KRH68139	Soybean	cytosol	18.55	22.54
KRH00031	Soybean	plastid	9.34	22.03
KRH50491	Soybean	cytosol	25.92	18.67

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100798680	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	EMBL:ACUP02002703	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf
InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	EnsemblPlantsGene:GLYMA_04G186000	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	UniProt:I1JXA0	EnsemblPlants:KRH63585
ProteinID:KRH63585	ProteinID:KRH63585.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933
ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF92	SMART:SM00382	SMART:SM01072	SMART:SM01073
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	UniParc:UPI000233A96E	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:45614989..45619883

Molecular Weight (calculated)

90888.1 Da

IEP (calculated)

4.863

GRAVY (calculated)

-0.441

Length

814 amino acids

Sequence
(BLAST)

001: MADPTSSNPD KDQSSTEPKS EKKDYSTAIL ERKKSPNRLV VDEAINDENS VVTLHPETME KLQFFRGDTV LIKGKKRRDT ICVVLADEQC DEPKIRMNKV
101: VRANLRVRLG DVVSVHQCPD VKYGKRVHIL PIDDTIEGVT GNLFDAYLKP YFMESYRPVR KGDLFLVRGG MRSIEFKLIE TDPGEYCVVA PDTEIFCEGE
201: PIKREDEERL NDVGYDDVGG VRKQMAQIRE LVELPLRHPQ LFKSIGVKPP KGILLYGPPG SGKTLIARAV ANETGAFFFL INGPEIMSKL AGESESNLRK
301: AFEEAEKNSP SIIFIDELDS IAPKREKTHG EVERRIVSQL LTLMDGLKTR SHVIVIGATN RPNSIDPALR RFGRFDREID IGVPDEVGRL EVLRIHTKNM
401: KLSDNVDLEK VARDTHGYVG ADLAALCTEA ALQCIREKMD VIDLEDETID AEVLNSMAVT NEHFQTALSS SNPSALRETV VEVPNVSWDD IGGLENVKRE
501: LQETVQYPVE HPEKFEKFGM SPSKGVLFYG PPGCGKTLLA KAIANECQAN FISVKGPELL TMWFGESEAN VREIFDKARQ SAPCVLFFDE LDSIATQRGS
601: SVGDAGGAAD RVLNQLLTEM DGMTAKKTVF IIGATNRPDI IDPALLRPGR LDQLIYIPLP DESSRLQIFK ACLRKSPISK DVDLSALARF THGFSGADIT
701: EICQRACKYA IREDIEKGIE KERRKRENPE AMEEDDTDEV PEIKPAHFEE SMKFARRSVS DADIRKYQLF AQTLQQSRGF GSEFRFPDQN ENTAAGASDP
801: FSSVTAEGDD DLYS

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.