CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96790
KRH68501

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G45000.1	KRG96790	AT1G09100.1	21798944
AT1G45000.1	KRH68501	AT1G09100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05868	Soybean	cytosol, nucleus	99.75	99.75
KRH51796	Soybean	cytosol	98.0	98.24
KRH61120	Soybean	endoplasmic reticulum	98.0	98.24
GSMUA_AchrUn_...	Banana	cytosol	95.74	95.26
VIT_18s0001g13090.t01	Wine grape	cytosol	94.99	95.23
AT5G43010.1	Thale cress	cytosol	92.98	92.98
AT1G45000.1	Thale cress	cytosol	92.98	92.98
CDY25226	Canola	cytosol	92.98	92.98
CDY22373	Canola	cytosol	92.98	92.98
CDY02428	Canola	cytosol, extracellular	92.98	92.98
CDX71534	Canola	cytosol	92.98	92.98
Bra035338.1-P	Field mustard	cytosol	92.98	92.98
Bra033655.1-P	Field mustard	cytosol	92.98	92.98
TraesCS6D01G149500.1	Wheat	cytosol	83.71	92.78
Os02t0199900-01	Rice	nucleus, plasma membrane	92.73	92.5
GSMUA_Achr4P03720_001	Banana	cytosol	92.23	92.46
GSMUA_Achr7P17620_001	Banana	cytosol	94.99	92.44
Zm00001d015788_P001	Maize	plasma membrane	92.48	92.25
Zm00001d053649_P002	Maize	cytosol, mitochondrion	92.48	92.25
EES06471	Sorghum	cytosol	92.48	92.25
TraesCS6A01G162700.2	Wheat	cytosol, golgi	91.98	91.75
TraesCS6B01G188500.1	Wheat	cytosol	91.98	91.75
TraesCS7A01G378600.1	Wheat	cytosol	91.23	91.0
TraesCS7D01G375500.1	Wheat	cytosol	91.23	91.0
TraesCS7B01G280400.1	Wheat	cytosol, unclear	91.23	91.0
Zm00001d046539_P002	Maize	cytosol, mitochondrion	90.48	90.7
EER88627	Sorghum	cytosol	90.23	90.45
Os06t0607800-01	Rice	nucleus	90.73	90.27
HORVU6Hr1G032570.5	Barley	cytosol	88.47	86.31
HORVU7Hr1G090380.3	Barley	cytosol	91.23	83.49
TraesCS7D01G532000.1	Wheat	cytosol	76.44	76.63
TraesCS7B01G468900.1	Wheat	cytosol	75.94	76.13
HORVU7Hr1G119300.13	Barley	cytosol	76.69	76.12
TraesCS7A01G545700.1	Wheat	cytosol	75.44	75.63
KRH51488	Soybean	mitochondrion	68.67	64.78
KRH00031	Soybean	plastid	51.13	59.13
KRH46990	Soybean	nucleus	43.36	41.39
KRH44668	Soybean	cytosol, mitochondrion, nucleus	43.36	41.39
KRH45565	Soybean	endoplasmic reticulum	20.05	39.22
KRH47728	Soybean	cytosol, nucleus	40.85	38.26
KRH69005	Soybean	nucleus	40.85	38.26
KRG97280	Soybean	cytosol, nucleus	40.85	38.26
KRH06311	Soybean	cytosol	40.85	38.26
KRH32292	Soybean	cytosol, nucleus	42.11	37.92
KRH19693	Soybean	cytosol	42.11	37.92
KRH06953	Soybean	cytosol	25.56	37.78
KRH30674	Soybean	cytosol, nucleus	39.1	37.77
KRG95799	Soybean	cytosol, nucleus	41.85	37.44
KRH67524	Soybean	nucleus	41.85	37.44
KRH33891	Soybean	endoplasmic reticulum, nucleus	39.35	37.12
KRG92899	Soybean	cytosol, nucleus	39.35	37.12
KRG98107	Soybean	cytosol	38.85	36.73
KRH30673	Soybean	cytosol, nucleus	38.85	36.64
KRH68501	Soybean	nucleus	38.35	36.0
KRG96790	Soybean	mitochondrion	29.32	35.24
KRG99061	Soybean	cytosol	15.29	30.5
KRG94277	Soybean	cytosol	13.28	25.6
KRH45638	Soybean	cytosol	15.54	19.31
KRH70928	Soybean	cytosol	27.32	17.99
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	34.34	16.96
KRH67721	Soybean	endoplasmic reticulum, nucleus	34.09	16.83
KRH63585	Soybean	endoplasmic reticulum	34.34	16.83
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	34.34	16.83
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	34.09	16.77
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	33.83	16.73
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	34.09	16.73
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	30.33	16.71
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	33.58	16.6
KRH30601	Soybean	cytosol	33.08	16.38
KRH44049	Soybean	nucleus	30.83	15.55
KRH10420	Soybean	mitochondrion	18.8	15.15
KRH66707	Soybean	plastid	31.33	11.95
KRG96401	Soybean	mitochondrion	26.57	11.53
KRH68139	Soybean	cytosol	17.29	10.3
KRH50491	Soybean	cytosol	26.82	9.47
KRG95054	Soybean	plastid	17.54	9.08

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100785863	MapMan:19.2.6.2.1.4	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
UniProt:A0A0R0GHN2	InterPro:AAA+_ATPase	EMBL:ACUP02008565	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil
EnsemblPlantsGene:GLYMA_14G071000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	EnsemblPlants:KRH15139	ProteinID:KRH15139
ProteinID:KRH15139.1	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF58
SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI000189D0CB	:	:

Description

hypothetical protein

Coordinates

chr14:+:5972251..5975582

Molecular Weight (calculated)

44655.1 Da

IEP (calculated)

8.422

GRAVY (calculated)

-0.358

Length

399 amino acids

Sequence
(BLAST)

001: MTDAAEDATR RRNAVAEYRK KLLQHKELES RVRSVRENLR ASKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTA
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLSDQIRE LRESIELPLM NPELFIRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIEAN
201: FLKVVSSAII DKYIGESARL IREMFGYARD HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHAAGIAKHG EIDYEAVVKL AEGFNGADLR NVCTEAGMAA IRAERDYVIH EDFMKAVRKL NDAKKLESSA HYSADFGKD

Best Arabidopsis Sequence Match ( AT5G43010.1 )
(BLAST)

001: MTDVDESVRR RTAAVSEYRK KLLQHKELES RVRTARENLR GAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDNLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMDILK IHAAGIAKHG EIDYEAIVKL AEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE

Arabidopsis Description

RPT4A26S proteasome regulatory subunit 10B homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.