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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 28052459
msms PMID: 28052459 doi
A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr
Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX74142
CDY05176
CDY18782
CDY18801
CDY27761
CDY40714

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G43010.1 CDX74142 AT3G05530.1 21798944
AT5G43010.1 CDY05176 AT3G05530.1 21798944
AT5G43010.1 CDY18782 AT3G05530.1 21798944
AT5G43010.1 CDY18801 AT3G05530.1 21798944
AT5G43010.1 CDY27761 AT3G05530.1 21798944
AT5G43010.1 CDY40714 AT3G05530.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra035338.1-P Field mustard cytosol 100.0 100.0
CDY25226 Canola cytosol 99.75 99.75
CDX71534 Canola cytosol 99.25 99.25
CDY22373 Canola cytosol 99.0 99.0
AT5G43010.1 Thale cress cytosol 97.74 97.74
KRH61120 Soybean endoplasmic reticulum 93.98 94.22
KRH51796 Soybean cytosol 93.98 94.22
VIT_18s0001g13090.t01 Wine grape cytosol 93.73 93.97
KRH05868 Soybean cytosol, nucleus 93.23 93.23
KRH15139 Soybean cytosol, endoplasmic reticulum, nucleus 92.98 92.98
GSMUA_AchrUn_... Banana cytosol 93.23 92.77
TraesCS6D01G149500.1 Wheat cytosol 81.7 90.56
GSMUA_Achr7P17620_001 Banana cytosol 92.98 90.49
Zm00001d053649_P002 Maize cytosol, mitochondrion 90.48 90.25
EES06471 Sorghum cytosol 90.48 90.25
Os02t0199900-01 Rice nucleus, plasma membrane 90.23 90.0
Zm00001d015788_P001 Maize plasma membrane 89.97 89.75
TraesCS6A01G162700.2 Wheat cytosol, golgi 89.97 89.75
TraesCS6B01G188500.1 Wheat cytosol 89.97 89.75
GSMUA_Achr4P03720_001 Banana cytosol 89.22 89.45
Zm00001d046539_P002 Maize cytosol, mitochondrion 88.97 89.2
Os06t0607800-01 Rice nucleus 89.47 89.03
EER88627 Sorghum cytosol 88.47 88.69
TraesCS7A01G378600.1 Wheat cytosol 88.72 88.5
TraesCS7B01G280400.1 Wheat cytosol, unclear 88.72 88.5
TraesCS7D01G375500.1 Wheat cytosol 88.72 88.5
HORVU6Hr1G032570.5 Barley cytosol 87.22 85.09
HORVU7Hr1G090380.3 Barley cytosol 88.72 81.19
TraesCS7D01G532000.1 Wheat cytosol 76.44 76.63
TraesCS7A01G545700.1 Wheat cytosol 75.44 75.63
TraesCS7B01G468900.1 Wheat cytosol 74.94 75.13
HORVU7Hr1G119300.13 Barley cytosol 75.69 75.12
CDY20370 Canola cytosol 44.11 65.43
CDY39032 Canola cytosol 38.35 60.96
CDY39033 Canola cytosol 59.65 58.62
KRH00031 Soybean plastid 50.38 58.26
CDY20371 Canola cytosol, plastid 59.15 53.64
CDX70903 Canola cytosol 44.11 42.31
CDY35832 Canola cytosol 43.86 41.77
CDX74842 Canola cytosol 40.85 39.56
CDY20470 Canola cytosol, plasma membrane 41.35 38.73
CDY02494 Canola cytosol 41.35 38.73
CDY25685 Canola cytosol 41.35 38.73
CDY30665 Canola cytosol 41.35 38.73
CDY58566 Canola cytosol 39.1 38.61
CDY43865 Canola cytosol 39.1 38.61
CDY32995 Canola cytosol, extracellular 39.1 38.61
CDY32714 Canola cytosol 39.1 38.61
CDX88666 Canola cytosol 39.1 38.61
CDY02806 Canola cytosol 39.1 38.61
CDY24076 Canola cytosol 41.1 38.5
CDY36602 Canola cytosol 41.1 38.5
CDY08201 Canola cytosol 33.58 37.75
CDY06847 Canola cytosol 41.85 37.7
CDX97472 Canola cytosol 41.85 37.53
CDX92914 Canola cytosol, extracellular 41.6 37.47
CDY35245 Canola cytosol 41.6 37.47
CDY14224 Canola cytosol 41.6 37.3
CDY59958 Canola cytosol 32.83 35.99
CDX74142 Canola cytosol 38.1 35.85
CDY05176 Canola cytosol 38.1 35.85
CDY40714 Canola cytosol 38.1 35.85
CDY18782 Canola cytosol 38.1 35.85
CDY18801 Canola cytosol 38.1 35.85
CDY27761 Canola cytosol 38.1 35.85
CDY25624 Canola cytosol 21.8 34.66
CDY30663 Canola cytosol 36.84 34.03
CDX88865 Canola cytosol, extracellular 43.86 27.82
CDY44958 Canola cytosol, plasma membrane 44.11 24.41
CDY42324 Canola cytosol, extracellular 43.86 24.41
CDY04161 Canola cytosol 27.32 18.08
CDX74308 Canola mitochondrion 30.83 17.42
CDY11249 Canola cytosol 34.09 17.04
CDX80862 Canola cytosol, plastid 34.09 16.81
CDY41581 Canola cytosol 33.83 16.71
CDY54618 Canola cytosol 33.83 16.71
CDY07941 Canola cytosol 33.83 16.69
CDX73996 Canola cytosol 33.83 16.69
CDY41316 Canola cytosol, extracellular 33.83 16.67
CDY13308 Canola cytosol 33.83 16.67
CDY22207 Canola cytosol 33.83 16.67
CDX84794 Canola cytosol 30.33 16.29
CDY23949 Canola cytosol 29.57 16.28
CDX91939 Canola cytosol, mitochondrion 30.83 15.83
CDY45794 Canola nucleus 31.33 15.68
CDX67563 Canola cytosol 33.58 15.24
CDY33111 Canola endoplasmic reticulum, plasma membrane, vacuole 27.32 15.22
CDX78154 Canola cytosol 27.32 14.65
CDX73571 Canola cytosol 26.82 14.4
CDX89698 Canola endoplasmic reticulum 24.81 14.24
CDX89923 Canola cytosol 27.07 14.14
CDX72118 Canola plastid 30.08 12.71
CDY56774 Canola plastid 30.58 11.98
CDY32490 Canola mitochondrion 27.82 11.97
CDY37450 Canola mitochondrion 27.57 11.89
CDX69950 Canola cytosol 28.82 10.53
CDY62119 Canola cytosol 28.57 10.44
CDY02982 Canola cytosol 27.57 9.33
CDY18139 Canola extracellular, vacuole 4.01 5.28
CDY69655 Canola cytosol, nucleus 0.75 1.32
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.4Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300GO:A0A078ES86
InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreEnsemblPlants:CDY02428ProteinID:CDY02428ProteinID:CDY02428.1
ncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0016787GO:GO:0019538GO:GO:0030163EnsemblPlantsGene:GSBRNA2T00114032001InterPro:P-loop_NTPase
PFAM:PF00004ScanProsite:PS00674PANTHER:PTHR23073PANTHER:PTHR23073:SF58SMART:SM00382SUPFAM:SSF52540
TIGRFAMs:TIGR01242UniParc:UPI000253E5FFSEG:seg:::
Description
BnaA02g23370D
Coordinates
chrLK031934:-:1068620..1071149
Molecular Weight (calculated)
44752.2 Da
IEP (calculated)
8.418
GRAVY (calculated)
-0.374
Length
399 amino acids
Sequence
(BLAST)
001: MSDGEEAVRR RTAAVADYRK KLLQHKELES RVRTARENLR GSKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDNLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMDILK IHAAGIAKHG EIEYEAIVKL AEGFNGADLR NICTEAGMFA IRAERDYVIQ EDFMKAVRKL SEAKKLESSS HYNADFGKE
Best Arabidopsis Sequence Match ( AT5G43010.1 )
(BLAST)
001: MTDVDESVRR RTAAVSEYRK KLLQHKELES RVRTARENLR GAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDNLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMDILK IHAAGIAKHG EIDYEAIVKL AEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE
Arabidopsis Description
RPT4A26S proteasome regulatory subunit 10B homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.