CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70900
CDX88867
CDY42320
CDY44955

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19990.1	CDX70900	AT5G19960.1	21798944
AT5G19990.1	CDX88867	AT5G19960.1	21798944
AT5G19990.1	CDY42320	AT5G19960.1	21798944
AT5G19990.1	CDY44955	AT5G19960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G19990.1	Thale cress	cytosol	57.32	98.09
CDY69655	Canola	cytosol, nucleus	30.96	97.8
CDY35832	Canola	cytosol	57.04	97.61
CDX70903	Canola	cytosol	56.49	97.36
Bra020079.1-P	Field mustard	cytosol	97.21	96.67
CDY44958	Canola	cytosol, plasma membrane	97.21	96.67
CDX88865	Canola	cytosol, extracellular	84.66	96.5
AT5G20000.1	Thale cress	cytosol	55.65	95.23
GSMUA_Achr7P09950_001	Banana	cytosol	52.3	93.05
KRH44668	Soybean	cytosol, mitochondrion, nucleus	53.97	92.58
Solyc05g018590.2.1	Tomato	nucleus	53.56	92.09
VIT_09s0002g05800.t01	Wine grape	cytosol	53.56	92.09
KRH46990	Soybean	nucleus	53.56	91.87
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	53.42	91.85
TraesCS6A01G177600.1	Wheat	cytosol	53.42	91.63
TraesCS6B01G207100.1	Wheat	cytosol	53.42	91.63
TraesCS6D01G166700.1	Wheat	cytosol, golgi	53.42	91.63
Zm00001d053616_P002	Maize	cytosol	53.7	91.23
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	53.56	91.0
Os02t0205300-01	Rice	cytosol	53.7	90.8
TraesCS7D01G350300.1	Wheat	cytosol	53.42	90.54
HORVU7Hr1G084550.2	Barley	cytosol	53.42	90.54
TraesCS7A01G372600.1	Wheat	cytosol	53.42	90.54
TraesCS7B01G254400.1	Wheat	cytosol	53.42	90.54
Os06t0600100-01	Rice	plasma membrane	50.77	86.05
EER88603	Sorghum	cytosol	48.81	83.53
HORVU6Hr1G036990.7	Barley	cytosol	53.42	82.9
PGSC0003DMT400038718	Potato	cytosol	47.56	78.75
Os06t0600301-00	Rice	plasma membrane	17.99	57.08
CDY39032	Canola	cytosol	16.74	47.81
CDY20370	Canola	cytosol	17.85	47.58
CDX74842	Canola	cytosol	26.22	45.63
CDY02494	Canola	cytosol	26.78	45.07
CDY36602	Canola	cytosol	26.78	45.07
CDY24076	Canola	cytosol	26.78	45.07
CDY25685	Canola	cytosol	26.78	45.07
CDY30665	Canola	cytosol	26.78	45.07
CDY20470	Canola	cytosol, plasma membrane	26.64	44.84
CDY25226	Canola	cytosol	24.55	44.11
CDY02428	Canola	cytosol, extracellular	24.41	43.86
CDX71534	Canola	cytosol	24.41	43.86
CDY22373	Canola	cytosol	24.41	43.86
CDY08201	Canola	cytosol	21.06	42.54
CDY39033	Canola	cytosol	23.01	40.64
CDY27761	Canola	cytosol	23.71	40.09
CDX74142	Canola	cytosol	23.71	40.09
CDY40714	Canola	cytosol	23.71	40.09
CDY18801	Canola	cytosol	23.71	40.09
CDY18782	Canola	cytosol	23.71	40.09
CDY05176	Canola	cytosol	23.71	40.09
CDY43865	Canola	cytosol	22.32	39.6
CDY32995	Canola	cytosol, extracellular	22.32	39.6
CDY58566	Canola	cytosol	22.32	39.6
CDX88666	Canola	cytosol	22.32	39.6
CDY02806	Canola	cytosol	22.32	39.6
CDY32714	Canola	cytosol	22.32	39.6
CDY06847	Canola	cytosol	24.13	39.05
CDY35245	Canola	cytosol	23.99	38.83
CDX92914	Canola	cytosol, extracellular	23.99	38.83
CDY14224	Canola	cytosol	23.99	38.65
CDX97472	Canola	cytosol	23.99	38.65
CDY30663	Canola	cytosol	23.15	38.43
CDY59958	Canola	cytosol	18.83	37.09
CDY20371	Canola	cytosol, plastid	22.73	37.05
CDY25624	Canola	cytosol	12.13	34.66
CDY04161	Canola	cytosol	15.48	18.41
CDY07941	Canola	cytosol	18.13	16.07
CDX73996	Canola	cytosol	18.13	16.07
CDY22207	Canola	cytosol	18.13	16.05
CDY41316	Canola	cytosol, extracellular	18.13	16.05
CDY54618	Canola	cytosol	17.99	15.97
CDY41581	Canola	cytosol	17.99	15.97
CDY11249	Canola	cytosol	17.71	15.91
CDX74308	Canola	mitochondrion	15.62	15.86
CDX80862	Canola	cytosol, plastid	17.85	15.82
CDY13308	Canola	cytosol	17.85	15.8
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	15.34	15.36
CDX84794	Canola	cytosol	15.62	15.07
CDY23949	Canola	cytosol	15.2	15.03
CDY45794	Canola	nucleus	16.32	14.68
CDX67563	Canola	cytosol	17.85	14.56
CDX91939	Canola	cytosol, mitochondrion	15.76	14.54
CDX89923	Canola	cytosol	15.34	14.4
CDX78154	Canola	cytosol	14.64	14.11
CDX73571	Canola	cytosol	14.5	14.0
CDX72118	Canola	plastid	17.02	12.92
CDX89698	Canola	endoplasmic reticulum	12.41	12.81
CDY37450	Canola	mitochondrion	16.32	12.65
CDY32490	Canola	mitochondrion	16.32	12.62
CDY56774	Canola	plastid	17.29	12.18
CDX69950	Canola	cytosol	15.9	10.44
CDY62119	Canola	cytosol	15.76	10.35
CDY02982	Canola	cytosol	15.9	9.67
CDY18139	Canola	extracellular, vacuole	1.95	4.62

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.6	Gene3D:2.40.50.140	MapMan:23.5.1.4	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
GO:A0A078HYA5	UniProt:A0A078HYA5	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlants:CDY42324
ProteinID:CDY42324	ProteinID:CDY42324.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005524	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	EnsemblPlantsGene:GSBRNA2T00074567001	InterPro:IPR002041
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF00071	PRINTS:PR00627	ScanProsite:PS00674	PFscan:PS51418
PANTHER:PTHR23073	PANTHER:PTHR23073:SF57	InterPro:Ran_GTPase	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00382	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
TIGRFAMs:TIGR01242	UniParc:UPI0004EF08B5	SEG:seg	:	:	:

Description

BnaC02g09300DBnaC02g09300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYA5]

Coordinates

chrLK032520:+:272515..277248

Molecular Weight (calculated)

80916.9 Da

IEP (calculated)

9.148

GRAVY (calculated)

-0.460

Length

717 amino acids

Sequence
(BLAST)

001: MAAVGVESMR PESAMEETCN VKIAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA RSHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDKALLR PGRIDRKIEF PNPNEDSRCD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWKR PRGTKAEKDL TVEKAALKLR SDQKEGNLTV VRIASDVSEN PCKKISSFKN PQSPSRRFSP SQNIYHLPAR SRDSQNMALP
501: NQQTVDYPSF KLVIVGDGGT GKTTFVKRHL TGEFEKKYEP TIGVEVHPLD FFTNCGKIRF YCWDTAGQEK FGGLRDGYYI HGQCAVIMFD VTARLTYKNV
601: PTWHRDLCRV CENIPIVLCG NKVDVKNRQV KAKQVTFHRK KNLQYYEISA KSNYNFEKPF LYLARKLAGD PNLHFVESPA LAPPEVHIDV AEQQKNEADL
701: IAAAAQPLPD DDDDAFE

Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)

001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Arabidopsis Description

RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.