CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39033	Canola	cytosol	87.5	94.83
CDY20370	Canola	cytosol	55.68	91.08
CDY39032	Canola	cytosol	44.77	78.49
Bra008198.1-P	Field mustard	cytosol	90.0	63.06
TraesCS6D01G149500.1	Wheat	cytosol	50.0	61.11
Zm00001d046539_P002	Maize	cytosol, mitochondrion	54.77	60.55
GSMUA_AchrUn_...	Banana	cytosol	54.32	59.6
Zm00001d053649_P002	Maize	cytosol, mitochondrion	54.09	59.5
EES06471	Sorghum	cytosol	54.09	59.5
Zm00001d015788_P001	Maize	plasma membrane	54.09	59.5
CDY02428	Canola	cytosol, extracellular	53.64	59.15
CDY25226	Canola	cytosol	53.64	59.15
EER88627	Sorghum	cytosol	53.41	59.05
Os02t0199900-01	Rice	nucleus, plasma membrane	53.64	59.0
TraesCS6A01G162700.2	Wheat	cytosol, golgi	53.64	59.0
CDY22373	Canola	cytosol	53.41	58.9
CDX71534	Canola	cytosol	53.41	58.9
VIT_18s0001g13090.t01	Wine grape	cytosol	53.18	58.79
TraesCS6B01G188500.1	Wheat	cytosol	53.41	58.75
GSMUA_Achr4P03720_001	Banana	cytosol	52.95	58.54
TraesCS7D01G375500.1	Wheat	cytosol	53.18	58.5
TraesCS7B01G280400.1	Wheat	cytosol, unclear	53.18	58.5
Os06t0607800-01	Rice	nucleus	53.18	58.35
GSMUA_Achr7P17620_001	Banana	cytosol	54.32	58.29
TraesCS7A01G378600.1	Wheat	cytosol	52.95	58.25
HORVU6Hr1G032570.5	Barley	cytosol	52.27	56.23
TraesCS7A01G545700.1	Wheat	cytosol	49.55	54.77
HORVU7Hr1G090380.3	Barley	cytosol	54.09	54.59
TraesCS7D01G532000.1	Wheat	cytosol	49.32	54.52
TraesCS7B01G468900.1	Wheat	cytosol	48.86	54.02
HORVU7Hr1G119300.13	Barley	cytosol	48.64	53.23
CDX70903	Canola	cytosol	37.27	39.42
CDY35832	Canola	cytosol	37.05	38.9
CDY25624	Canola	cytosol	20.68	36.26
CDY06847	Canola	cytosol	35.23	34.99
CDX92914	Canola	cytosol, extracellular	35.0	34.76
CDY35245	Canola	cytosol	35.0	34.76
CDY14224	Canola	cytosol	35.0	34.61
CDX97472	Canola	cytosol	35.0	34.61
CDX74842	Canola	cytosol	32.05	34.22
CDY43865	Canola	cytosol	31.36	34.16
CDY58566	Canola	cytosol	31.36	34.16
CDY02806	Canola	cytosol	31.36	34.16
CDX88666	Canola	cytosol	31.36	34.16
CDY32995	Canola	cytosol, extracellular	31.36	34.16
CDY32714	Canola	cytosol	31.36	34.16
CDY36602	Canola	cytosol	32.73	33.8
CDY30665	Canola	cytosol	32.73	33.8
CDY02494	Canola	cytosol	32.73	33.8
CDY25685	Canola	cytosol	32.73	33.8
CDY24076	Canola	cytosol	32.73	33.8
CDY20470	Canola	cytosol, plasma membrane	32.73	33.8
CDY08201	Canola	cytosol	26.59	32.96
CDY59958	Canola	cytosol	27.05	32.69
CDY40714	Canola	cytosol	30.68	31.84
CDY18782	Canola	cytosol	30.68	31.84
CDX74142	Canola	cytosol	30.68	31.84
CDY18801	Canola	cytosol	30.68	31.84
CDY05176	Canola	cytosol	30.68	31.84
CDY27761	Canola	cytosol	30.68	31.84
CDY30663	Canola	cytosol	29.77	30.32
CDX88865	Canola	cytosol, extracellular	37.05	25.91
CDY44958	Canola	cytosol, plasma membrane	37.27	22.75
CDY42324	Canola	cytosol, extracellular	37.05	22.73
CDY04161	Canola	cytosol	24.09	17.58
CDX74308	Canola	mitochondrion	25.45	15.86
CDY23949	Canola	cytosol	25.0	15.17
CDY11249	Canola	cytosol	27.5	15.16
CDY54618	Canola	cytosol	27.73	15.1
CDY41581	Canola	cytosol	27.73	15.1
CDX80862	Canola	cytosol, plastid	27.73	15.08
CDY07941	Canola	cytosol	27.73	15.08
CDX73996	Canola	cytosol	27.73	15.08
CDX84794	Canola	cytosol	25.45	15.07
CDY41316	Canola	cytosol, extracellular	27.73	15.06
CDY22207	Canola	cytosol	27.73	15.06
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	24.32	14.94
CDY13308	Canola	cytosol	27.27	14.81
CDX91939	Canola	cytosol, mitochondrion	25.68	14.54
CDY45794	Canola	nucleus	26.14	14.43
CDX89923	Canola	cytosol	24.77	14.27
CDX67563	Canola	cytosol	27.27	13.65
CDX89698	Canola	endoplasmic reticulum	20.45	12.95
CDX73571	Canola	cytosol	21.36	12.65
CDX78154	Canola	cytosol	21.36	12.63
CDX72118	Canola	plastid	26.82	12.5
CDY37450	Canola	mitochondrion	26.14	12.43
CDY32490	Canola	mitochondrion	26.14	12.41
CDY56774	Canola	plastid	27.27	11.79
CDX69950	Canola	cytosol	24.55	9.89
CDY62119	Canola	cytosol	24.09	9.71
CDY02982	Canola	cytosol	24.77	9.25
CDY18139	Canola	extracellular, vacuole	3.41	4.95
CDY69655	Canola	cytosol, nucleus	0.68	1.32

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.4	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	GO:A0A078G4L6
UniProt:A0A078G4L6	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlants:CDY20371	ProteinID:CDY20371
ProteinID:CDY20371.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163
GO:GO:0036402	GO:GO:1901800	EnsemblPlantsGene:GSBRNA2T00012388001	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
InterPro:PSMC6	PANTHER:PTHR23073	PANTHER:PTHR23073:SF59	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242
UniParc:UPI0004EEA1C8	:	:	:	:	:

Description

BnaC02g24450DBnaC02g24450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4L6]

Coordinates

chrLK032107:+:120737..123653

Molecular Weight (calculated)

49620.2 Da

IEP (calculated)

8.338

GRAVY (calculated)

-0.265

Length

440 amino acids

Sequence
(BLAST)

001: MGWNLCCIFP LHGWNLQTPS SSLYMSFIIY KPASMEDVDE EIVRRINDEK VKRGIAIMRC QSKLHIRNIN QERTKTVKEN LEALKIRLEE TEDELKYFTT
101: TNAELVGEVM QPLGKERFLV KVNEGVRYIV NRSSLAAHSK LVSGTRVSLQ RRTFTIMRIL PPKVNPFVQK MVYQHDGGDV SYSDLGGLTH QLKDVRDWIE
201: RPLIDPDIFE RVGVKPPKGV LLYGPPGTGK TLLAKAISSN INSTFLMVVS SSLVSKYVGE SSLLVREMFK YAREHQPCII FMDEIDAIGR RRSSYGEGDT
301: SECDRVLIEL LSQLDGFNEL DKVTVIMATN RPDVLDPALL RPGRIDKKIE FSLPNEDSRM RIIKIHASGI TKQGDIDYEK VVKLSEGFSG ADMRNICTEA
401: GMLALRAGHD YVVPNDFIKA VTKLGEAKKL ESSAHYSAGF

Best Arabidopsis Sequence Match ( AT1G45000.1 )
(BLAST)

001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE

Arabidopsis Description

RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.