CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25624	Canola	cytosol	31.44	88.45
CDX91939	Canola	cytosol, mitochondrion	96.18	87.39
Bra000999.1-P	Field mustard	cytosol, mitochondrion	98.87	83.79
CDX84794	Canola	cytosol	72.24	68.64
CDY23949	Canola	cytosol	69.26	67.45
AT3G01610.2	Thale cress	nucleus	78.33	66.63
CDY45794	Canola	nucleus	74.08	65.62
CDX89698	Canola	endoplasmic reticulum	62.04	63.02
Zm00001d009592_P001	Maize	cytosol	20.68	55.73
Zm00001d035913_P002	Maize	cytosol, mitochondrion	51.84	49.93
GSMUA_Achr4P03560_001	Banana	mitochondrion	54.96	49.62
EER87717	Sorghum	cytosol	54.25	49.42
PGSC0003DMT400015455	Potato	mitochondrion	53.4	49.41
Os06t0109400-01	Rice	cytosol	53.26	48.83
Solyc01g068330.2.1	Tomato	nucleus	56.66	48.72
Zm00001d045566_P001	Maize	cytosol, mitochondrion	52.97	48.7
VIT_01s0010g02600.t01	Wine grape	cytosol	56.8	48.61
TraesCS5D01G081900.1	Wheat	mitochondrion	51.13	48.59
PGSC0003DMT400046254	Potato	cytosol	56.52	48.54
TraesCS7D01G023600.1	Wheat	mitochondrion	52.97	47.64
Zm00001d022096_P002	Maize	mitochondrion	50.99	47.56
Zm00001d027244_P001	Maize	cytosol	24.65	47.54
TraesCS7A01G025800.1	Wheat	mitochondrion	52.83	47.52
TraesCS4A01G463300.1	Wheat	mitochondrion	52.83	47.52
TraesCS3D01G443600.1	Wheat	mitochondrion	50.0	47.19
TraesCS3A01G450800.1	Wheat	mitochondrion	49.58	46.92
TraesCS3B01G487900.1	Wheat	mitochondrion	49.43	46.85
Zm00001d002717_P001	Maize	mitochondrion	26.77	46.32
HORVU7Hr1G002880.2	Barley	plastid	52.12	45.94
Zm00001d053999_P001	Maize	cytosol	25.07	43.07
KRH10420	Soybean	mitochondrion	27.2	38.79
CDY20370	Canola	cytosol	14.16	37.17
CDY39032	Canola	cytosol	13.03	36.65
CDY04161	Canola	cytosol	28.47	33.33
CDY41581	Canola	cytosol	37.39	32.67
CDY54618	Canola	cytosol	37.39	32.67
CDX73996	Canola	cytosol	37.11	32.39
CDY07941	Canola	cytosol	37.11	32.39
CDY41316	Canola	cytosol, extracellular	37.11	32.35
CDY22207	Canola	cytosol	37.11	32.35
CDY11249	Canola	cytosol	36.26	32.08
CDY13308	Canola	cytosol	36.69	31.98
CDX80862	Canola	cytosol, plastid	36.26	31.64
CDY22373	Canola	cytosol	17.56	31.08
CDX71534	Canola	cytosol	17.56	31.08
CDY02428	Canola	cytosol, extracellular	17.42	30.83
CDY25226	Canola	cytosol	17.42	30.83
CDX78154	Canola	cytosol	31.44	29.84
CDX73571	Canola	cytosol	31.3	29.74
CDX67563	Canola	cytosol	36.26	29.12
CDX74842	Canola	cytosol	16.71	28.64
CDY20470	Canola	cytosol, plasma membrane	17.28	28.64
CDY24076	Canola	cytosol	17.14	28.4
CDY36602	Canola	cytosol	17.14	28.4
CDY30665	Canola	cytosol	17.14	28.4
CDY02494	Canola	cytosol	17.0	28.17
CDY39033	Canola	cytosol	16.15	28.08
CDY25685	Canola	cytosol	16.86	27.93
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	28.19	27.79
CDY32995	Canola	cytosol, extracellular	15.58	27.23
CDY32714	Canola	cytosol	15.58	27.23
CDY02806	Canola	cytosol	15.58	27.23
CDY58566	Canola	cytosol	15.58	27.23
CDX88666	Canola	cytosol	15.58	27.23
CDY43865	Canola	cytosol	15.58	27.23
CDX70903	Canola	cytosol	15.86	26.92
CDY35832	Canola	cytosol	15.86	26.73
CDY20371	Canola	cytosol, plastid	15.86	25.45
CDY08201	Canola	cytosol	12.75	25.35
CDY30663	Canola	cytosol	15.44	25.23
CDY18801	Canola	cytosol	15.01	25.0
CDY18782	Canola	cytosol	15.01	25.0
CDY05176	Canola	cytosol	15.01	25.0
CDY27761	Canola	cytosol	15.01	25.0
CDY40714	Canola	cytosol	14.87	24.76
CDX74142	Canola	cytosol	14.87	24.76
CDY35245	Canola	cytosol	15.44	24.61
CDY06847	Canola	cytosol	15.44	24.61
CDX92914	Canola	cytosol, extracellular	15.3	24.38
CDY14224	Canola	cytosol	15.3	24.27
CDX97472	Canola	cytosol	15.3	24.27
CDX72118	Canola	plastid	30.88	23.09
CDX89923	Canola	cytosol	24.65	22.77
CDY59958	Canola	cytosol	11.19	21.7
CDY56774	Canola	plastid	31.02	21.51
CDY32490	Canola	mitochondrion	26.63	20.28
CDY37450	Canola	mitochondrion	26.49	20.22
CDX88865	Canola	cytosol, extracellular	15.72	17.65
CDY02982	Canola	cytosol	28.05	16.79
CDX69950	Canola	cytosol	25.64	16.58
CDY62119	Canola	cytosol	25.35	16.39
CDY42324	Canola	cytosol, extracellular	15.86	15.62
CDY44958	Canola	cytosol, plasma membrane	15.86	15.53
CDY18139	Canola	extracellular, vacuole	6.66	15.51
CDY69655	Canola	cytosol, nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078CH40	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	EnsemblPlants:CDX74308	ProteinID:CDX74308	ProteinID:CDX74308.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00112101001	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF55	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0004EE645F	SEG:seg

Description

BnaA03g27390D

Coordinates

chrLK031800:+:2148666..2152114

Molecular Weight (calculated)

77025.8 Da

IEP (calculated)

8.322

GRAVY (calculated)

-0.420

Length

706 amino acids

Sequence
(BLAST)

001: MVRRGRGGGG GGMGGGINRR YLSQVMDSRH PRFDLINDSL RDNYAKMNNS PAAKKPVVEK NVEVETVTNN KGRSKMGLKK EARVSLPMSG TTPTDNSNTK
101: GGGGGPTFKD FGGIKKVLDD LENYVLFPLL NPPPFKTMGV KPPSGILFHG PPGCGKTQLA NAIANEVGVP FYQISATEVV SGVSGASEEN IRELFSKAYR
201: TAPSIVFIDE IDAIGSKREN QQREMEKRIV TQLLTCMDGP RNKGDKNDAA DSTSSGYVLV IGATNRPDAL DPALRRSGRF EREIALNVPD EDARAEILSV
301: VAQRLRLEGS FDMKRIARLT PGFVGADLEG VANMAGSLGI KRVKDSRKLQ LSGDSDNQDD RSWLRQPWSE EDLEKLFVRM SDFEEAVKLV KGSLTREGFS
401: TVPNVTWGDV GGLDHLRREL NNYIVRPIKN PEIYKAFGAS LETGFLLYGP PGCGKTLVAK AVANEAGANF IHIKGPELLN KYVGESELAI RTLFQRARTS
501: SPCVLFFDEV DALTTSRGRE GGSVVESVLN QFLTELDGGE RRNVYVIGAT NRPDVIDSAL LRPGRFGNLV YVPLPNADER VLILKSIAKK RPIDPSVDLD
601: AIAKNCEGFS GADLANLMDK AIHVAVKEKF GSSESSEGDN IDLSDCTIKM THFEQGLSLV TPSVSKQQIK HYEELPKKLQ RSTGRNNMEQ INVGSTFALE
701: ENKGLS

Best Arabidopsis Sequence Match ( AT3G01610.2 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.