Factsheet for GSMUA_AchrUn_randomP00180_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P04520_001
GSMUA_Achr9P13230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43010.1	GSMUA_Achr5P04520_001	AT3G05530.1	21798944
AT5G43010.1	GSMUA_Achr9P13230_001	AT3G05530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51796	Soybean	cytosol	95.76	96.48
KRH61120	Soybean	endoplasmic reticulum	95.76	96.48
GSMUA_Achr7P17620_001	Banana	cytosol	98.25	96.1
KRH05868	Soybean	cytosol, nucleus	95.51	95.99
VIT_18s0001g13090.t01	Wine grape	cytosol	95.26	95.98
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	95.26	95.74
VIT_03s0038g04350.t01	Wine grape	cytosol	94.51	94.99
Solyc01g109940.2.1	Tomato	nucleus	93.77	94.47
PGSC0003DMT400079514	Potato	cytosol	93.52	94.22
Bra035338.1-P	Field mustard	cytosol	92.77	93.23
CDY02428	Canola	cytosol, extracellular	92.77	93.23
CDY22373	Canola	cytosol	92.52	92.98
CDY25226	Canola	cytosol	92.52	92.98
CDX71534	Canola	cytosol	92.52	92.98
Bra033655.1-P	Field mustard	cytosol	92.52	92.98
AT1G45000.1	Thale cress	cytosol	92.52	92.98
TraesCS6D01G149500.1	Wheat	cytosol	83.29	92.78
AT5G43010.1	Thale cress	cytosol	92.27	92.73
GSMUA_Achr4P03720_001	Banana	cytosol	92.02	92.71
Os02t0199900-01	Rice	nucleus, plasma membrane	92.27	92.5
Zm00001d053649_P002	Maize	cytosol, mitochondrion	92.02	92.25
EES06471	Sorghum	cytosol	92.02	92.25
TraesCS6A01G162700.2	Wheat	cytosol, golgi	91.77	92.0
TraesCS6B01G188500.1	Wheat	cytosol	91.77	92.0
Zm00001d015788_P001	Maize	plasma membrane	91.52	91.75
Zm00001d046539_P002	Maize	cytosol, mitochondrion	90.27	90.95
EER88627	Sorghum	cytosol	90.02	90.7
Os06t0607800-01	Rice	nucleus	90.52	90.52
TraesCS7A01G378600.1	Wheat	cytosol	90.27	90.5
TraesCS7B01G280400.1	Wheat	cytosol, unclear	90.27	90.5
TraesCS7D01G375500.1	Wheat	cytosol	90.27	90.5
HORVU6Hr1G032570.5	Barley	cytosol	88.53	86.8
Solyc10g054040.1.1	Tomato	cytosol, unclear	85.29	85.71
HORVU7Hr1G090380.3	Barley	cytosol	90.27	83.03
TraesCS7D01G532000.1	Wheat	cytosol	77.31	77.89
TraesCS7A01G545700.1	Wheat	cytosol	76.31	76.88
TraesCS7B01G468900.1	Wheat	cytosol	76.31	76.88
HORVU7Hr1G119300.13	Barley	cytosol	76.31	76.12
CDY20370	Canola	cytosol	45.14	67.29
KRH51488	Soybean	mitochondrion	69.33	65.72
CDY39032	Canola	cytosol	38.65	61.75
KRH00031	Soybean	plastid	50.87	59.13
CDY39033	Canola	cytosol	59.85	59.11
CDY20371	Canola	cytosol, plastid	59.6	54.32
GSMUA_AchrUn_...	Banana	cytosol	22.44	50.56
GSMUA_Achr6P12250_001	Banana	cytosol	34.16	45.21
GSMUA_Achr11P...	Banana	cytosol	35.66	43.87
GSMUA_Achr7P09950_001	Banana	cytosol	43.39	43.18
GSMUA_Achr10P...	Banana	cytosol	43.39	41.43
GSMUA_Achr8P16830_001	Banana	cytosol	41.65	39.29
GSMUA_AchrUn_...	Banana	cytosol	41.65	39.29
GSMUA_Achr4P05840_001	Banana	cytosol	41.15	39.19
GSMUA_Achr5P04520_001	Banana	cytosol	39.4	39.01
GSMUA_Achr4P05850_001	Banana	cytosol	41.15	38.92
GSMUA_Achr3P04570_001	Banana	cytosol	40.9	38.77
GSMUA_Achr9P13230_001	Banana	cytosol	39.15	38.77
Bra008198.1-P	Field mustard	cytosol	59.6	38.06
GSMUA_Achr7P21960_001	Banana	cytosol	38.15	31.61
GSMUA_Achr5P13290_001	Banana	cytosol	14.71	26.82
GSMUA_Achr3P00250_001	Banana	cytosol	10.97	22.45
GSMUA_Achr6P11080_001	Banana	plastid	30.92	20.7
GSMUA_Achr6P29120_001	Banana	cytosol	30.92	20.67
GSMUA_Achr7P04540_001	Banana	cytosol	34.91	17.72
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	34.66	17.18
GSMUA_Achr4P26800_001	Banana	cytosol	34.66	17.18
GSMUA_Achr9P23550_001	Banana	mitochondrion	33.17	16.5
GSMUA_Achr4P03560_001	Banana	mitochondrion	30.67	15.73
GSMUA_Achr3P00260_001	Banana	cytosol	16.46	13.52
GSMUA_Achr6P20030_001	Banana	cytosol	27.43	11.39
GSMUA_Achr11P...	Banana	cytosol	27.68	9.9

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.4	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163
EnsemblPlantsGene:GSMUA_AchrUn_randomG00180_001	EnsemblPlants:GSMUA_AchrUn_randomP00180_001	EnsemblPlants:GSMUA_AchrUn_randomT00180_001	UniProt:M0U530	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF58	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242
UniParc:UPI000296B28D	:	:	:	:	:

Description

26S protease regulatory subunit S10B homolog B [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG00180_001]

Coordinates

chrchrUn_random:-:556601..564501

Molecular Weight (calculated)

44803.2 Da

IEP (calculated)

8.422

GRAVY (calculated)

-0.364

Length

401 amino acids

Sequence
(BLAST)

001: MGDGGEDAVR RRNAVAEYRK KLLQHKELDS RLRTLRENLR ASKKEFTKTE DDLKSLQSVG QIIGEVLRPL DNERFIVKAS SGPRYVVGCR SKVDKEKLTA
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNVSYSA VGGLSDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFGYARD HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHAAGIAKHG DIDYEAVVKL AEASGFNGAD LRNVCTEAGM SAIRAERDYV IHEDFMKAVR KLNEAKKLES SAHYNADFGK
401: D

Best Arabidopsis Sequence Match ( AT1G45000.1 )
(BLAST)

001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE

Arabidopsis Description

RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.