Factsheet for GSMUA_Achr3P00260_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
endoplasmic reticulum 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	87.7	52.9
GSMUA_Achr9P23550_001	Banana	mitochondrion	87.3	52.85
GSMUA_Achr4P26800_001	Banana	cytosol	86.89	52.41
GSMUA_Achr7P04540_001	Banana	cytosol	84.84	52.41
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	86.27	52.04
Zm00001d027707_P001	Maize	cytosol, plasma membrane	85.25	51.55
EER94171	Sorghum	cytosol	85.45	51.48
EER92840	Sorghum	cytosol	85.45	51.48
Zm00001d032859_P006	Maize	plasma membrane	85.45	51.48
Zm00001d014124_P001	Maize	cytosol, plasma membrane	85.45	51.42
Zm00001d048409_P001	Maize	cytosol	84.63	51.37
TraesCS4A01G035700.1	Wheat	plastid	84.02	50.43
TraesCS4B01G268400.1	Wheat	golgi	83.81	50.31
TraesCS4D01G267800.1	Wheat	cytosol	83.81	50.31
HORVU4Hr1G072010.4	Barley	cytosol	84.02	50.31
TraesCS4A01G035500.1	Wheat	golgi, nucleus	84.22	50.24
HORVU4Hr1G071960.2	Barley	cytosol	84.02	50.18
TraesCS4B01G268200.1	Wheat	cytosol	83.81	50.06
TraesCS4D01G267600.2	Wheat	cytosol	83.81	50.0
TraesCS1B01G192400.1	Wheat	cytosol	82.38	49.75
TraesCS1D01G223800.1	Wheat	cytosol	81.15	49.5
HORVU1Hr1G060370.1	Barley	cytosol	81.56	49.32
TraesCS1A01G222100.1	Wheat	cytosol	80.74	49.25
TraesCS1B01G235300.1	Wheat	cytosol	80.53	49.12
TraesCS1B01G235500.1	Wheat	cytosol	80.53	49.12
TraesCS1D01G253100.1	Wheat	cytosol	80.53	49.12
TraesCSU01G001000.1	Wheat	cytosol	80.74	49.07
HORVU1Hr1G060340.2	Barley	cytosol	81.56	48.95
TraesCS1A01G190300.1	Wheat	cytosol	80.94	48.89
HORVU1Hr1G049910.1	Barley	cytosol	81.15	48.65
TraesCS1B01G235400.1	Wheat	cytosol	62.09	47.2
HORVU0Hr1G038060.2	Barley	cytosol	47.34	43.67
Zm00001d032117_P001	Maize	cytosol	24.59	37.5
GSMUA_Achr6P11080_001	Banana	plastid	26.02	21.2
GSMUA_Achr4P03560_001	Banana	mitochondrion	30.74	19.18
GSMUA_Achr6P29120_001	Banana	cytosol	22.95	18.67
GSMUA_AchrUn_...	Banana	cytosol	13.52	16.46
GSMUA_Achr7P17620_001	Banana	cytosol	13.73	16.34
GSMUA_Achr4P03720_001	Banana	cytosol	13.32	16.33
GSMUA_AchrUn_...	Banana	cytosol	14.14	16.24
GSMUA_Achr8P16830_001	Banana	cytosol	14.14	16.24
GSMUA_Achr6P12250_001	Banana	cytosol	10.04	16.17
GSMUA_Achr11P...	Banana	cytosol	10.45	15.64
GSMUA_Achr4P05850_001	Banana	cytosol	13.32	15.33
GSMUA_Achr4P05840_001	Banana	cytosol	12.91	14.96
GSMUA_Achr7P09950_001	Banana	cytosol	12.3	14.89
GSMUA_Achr10P...	Banana	cytosol	12.5	14.52
GSMUA_Achr9P13230_001	Banana	cytosol	11.89	14.32
GSMUA_Achr5P04520_001	Banana	cytosol	11.89	14.32
GSMUA_Achr3P04570_001	Banana	cytosol	11.89	13.71
GSMUA_Achr6P20030_001	Banana	cytosol	24.8	12.53
GSMUA_Achr7P21960_001	Banana	cytosol	11.68	11.78
GSMUA_Achr11P...	Banana	cytosol	19.88	8.65
GSMUA_Achr5P13290_001	Banana	cytosol	3.07	6.82
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	2.25	5.64
GSMUA_Achr3P00250_001	Banana	cytosol	2.25	5.61
GSMUA_AchrUn_...	Banana	cytosol	1.64	4.49

Protein Annotations

Gene3D:1.10.8.60	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	MapMan:35.1	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr3G00260_001	EnsemblPlants:GSMUA_Achr3P00260_001	EnsemblPlants:GSMUA_Achr3T00260_001
UniProt:M0SAJ4	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540
SUPFAM:SSF54585	UniParc:UPI0002963273	:	:	:	:

Description

Cell division cycle protein 48 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr3G00260_001]

Coordinates

chr3:-:248730..252732

Molecular Weight (calculated)

55164.1 Da

IEP (calculated)

6.058

GRAVY (calculated)

-0.210

Length

488 amino acids

Sequence
(BLAST)

001: MEKLQLFRGD TVLLKGKKRR DTICIALADD TCDEPKIRMN KVVRSNLRVR LGDVVSVHQC QDVKYRKRVH ILPVDGTIEG ITGNLFDVYL KPYFLEAYRP
101: VRKGDLFLVR GGMRSVEFKV TETDPPEYCV VAPDTEIFCD GDPIKREDEE LLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLEKT
201: HGEVERRIVS QLLTLMDGLK SRSHVIVIGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEVG RLEVLRIHTK NMKLAEDVDL ERVAKDTHGY VGADLAALCT
301: EAALQCIREK MDVIDLEDES IDAEILNSMA VTNEHFKTSL GTNNPSALRE TVVEVPNVTW DDIGGLENVK RELQETIQYP VEHPEKFEKF GMSTSKGVLF
401: YGPPGCGKTL LAKAIANECQ ANLISVKGPE FLTVYLAKVK QMFEKFSIRL LNLLHVYSFL MSWTRLQLRE GVVLGMQEVL LIEFSINS

Best Arabidopsis Sequence Match ( AT2G03670.1 )
(BLAST)

001: MLETESSVCD NIAGNEKWRA EAEIGGNERA LQALRELIIF PFRYPLEART LGLKWPRGLL LYGPPGTGKT SLVRAVVQEC DAHLIVLSPH SVHRAHAGES
101: EKVLREAFAE ASSHAVSDKP SVIFIDEIDV LCPRRDARRE QDVRIASQLF TLMDSNKPSS SAPRVVVVAS TNRVDAIDPA LRRAGRFDAL VEVSTPNEED
201: RLKILQLYTK KVNLDPSVDL QAIAISCNGY VGADLEALCR EATISASKRS SDSLILTSQD FKIAKSVVGP SINRGITVEI PKVTWDDVGG LKDLKKKLQQ
301: AVEWPIKHSA AFVKMGISPM RGILLHGPPG CSKTTLAKAA ANAAQASFFS LSCAELFSMY VGEGEALLRN TFQRARLASP SIIFFDEADV VACKRGDESS
401: SNSSTVGERL LSTLLTEMDG LEEAKGILVL AATNRPYAID AALMRPGRFD LVLYVPPPDL EARFEILQVH TRNMTLGDDV DLRKIAEETD LFTGAELEGL
501: CRESGTVSLR ENIAATAVFN RHFQTAKSSL KPALTIEEVE TYSSFRKAAK RSDSKPIPIN KKKATSTVFG FSWQLGVLSL LLLATGNYYF NHTKHELLVA
601: SAT

Arabidopsis Description

CDC48BCell division control protein 48 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.