Factsheet for GSMUA_Achr5P13290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
endoplasmic reticulum 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P00250_001	Banana	cytosol	60.0	67.35
TraesCS3D01G153300.1	Wheat	cytosol	64.09	62.95
TraesCS1D01G194500.1	Wheat	cytosol	73.18	60.75
TraesCS1D01G340100.1	Wheat	cytosol	63.64	54.69
GSMUA_AchrUn_...	Banana	cytosol	23.64	29.21
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	80.91	22.0
GSMUA_Achr4P26800_001	Banana	cytosol	80.91	22.0
GSMUA_Achr7P04540_001	Banana	cytosol	78.64	21.9
GSMUA_Achr9P23550_001	Banana	mitochondrion	77.73	21.22
GSMUA_Achr6P12250_001	Banana	cytosol	25.91	18.81
GSMUA_Achr11P...	Banana	cytosol	25.91	17.48
CDX78154	Canola	cytosol	59.09	17.47
CDX73571	Canola	cytosol	58.64	17.36
GSMUA_AchrUn_...	Banana	cytosol	26.82	14.71
GSMUA_Achr7P17620_001	Banana	cytosol	26.82	14.39
GSMUA_Achr4P03720_001	Banana	cytosol	25.45	14.07
GSMUA_Achr7P09950_001	Banana	cytosol	24.55	13.4
GSMUA_Achr4P05850_001	Banana	cytosol	25.45	13.21
GSMUA_Achr5P04520_001	Banana	cytosol	24.09	13.09
GSMUA_Achr9P13230_001	Banana	cytosol	24.09	13.09
GSMUA_Achr4P05840_001	Banana	cytosol	25.0	13.06
GSMUA_Achr8P16830_001	Banana	cytosol	25.0	12.94
GSMUA_Achr10P...	Banana	cytosol	24.55	12.86
GSMUA_AchrUn_...	Banana	cytosol	24.55	12.71
GSMUA_Achr6P29120_001	Banana	cytosol	32.27	11.83
GSMUA_Achr7P21960_001	Banana	cytosol	25.91	11.78
GSMUA_Achr3P04570_001	Banana	cytosol	22.27	11.58
KRG94277	Soybean	cytosol	10.0	10.63
GSMUA_Achr6P11080_001	Banana	plastid	26.82	9.85
KRG99061	Soybean	cytosol	7.73	8.5
GSMUA_Achr4P03560_001	Banana	mitochondrion	30.0	8.44
GSMUA_Achr6P20030_001	Banana	cytosol	30.0	6.83
GSMUA_Achr11P...	Banana	cytosol	30.91	6.07
KRH45638	Soybean	cytosol	8.18	5.61
GSMUA_Achr3P00260_001	Banana	cytosol	6.82	3.07

Protein Annotations

EnsemblPlants:GSMUA_Achr5P13290_001	EnsemblPlants:GSMUA_Achr5T13290_001	EnsemblPlantsGene:GSMUA_Achr5G13290_001	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR23077
PANTHER:PTHR23077:SF92	PFAM:PF00004	SUPFAM:SSF52540	UniParc:UPI0002950715	UniProt:M0SY58	MapMan:35.1

Description

Cell division cycle protein 48 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr5G13290_001]

Coordinates

chr5:-:9529096..9530443

Molecular Weight (calculated)

24604.5 Da

IEP (calculated)

7.372

GRAVY (calculated)

-0.365

Length

220 amino acids

Sequence
(BLAST)

001: MCVKSLTRLR QSVPCVLFSD ELDSTATQRG STVGDAGGAA DRVLNQLLTQ MDGMNGKKTV FIIGATKMPD IIDPVLLKPG RLDQLIYIPL PDKASRYQIF
101: KACLRKSSVS KDVNLRALAK YSQGFSGADI TDICQHACNF AIRENIEKDI ERERRKSENP EAMEQDEADE VPEIKAAHFE ESMKFARRSV SVADIRKYQA
201: IAQTLQQTSH CGTMEIFHVY

Best Arabidopsis Sequence Match ( AT3G09840.1 )
(BLAST)

001: MSTPAESSDS KSKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPATM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDDVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV TNEHFHTALG NSNPSALRET VVEVPNVSWN DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG GGSGGDGGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDSALLRP GRLDQLIYIP LPDEDSRLNI FKAALRKSPI AKDVDIGALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IEKEKRRSEN PEAMEEDGVD EVSEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFEN SAGSGATTGV ADPFATSAAA
801: AGDDDDLYN

Arabidopsis Description

CDC48AAT3G09840 protein [Source:UniProtKB/TrEMBL;Acc:B9DI55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.