Factsheet for GSMUA_Achr6P29120_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56690.1	GSMUA_Achr10P...	AT3G56800.1	11346951
AT3G56690.1	GSMUA_Achr10P...	AT3G56800.1	11346951
AT3G56690.1	GSMUA_Achr10P...	AT3G56800.1	11346951
AT3G56690.1	GSMUA_Achr10P...	AT3G56800.1	11346951
AT3G56690.1	GSMUA_Achr11P...	AT3G56800.1	11346951
AT3G56690.1	GSMUA_Achr2P01120_001	AT3G56800.1	11346951
AT3G56690.1	GSMUA_Achr3P09330_001	AT3G56800.1	11346951
AT3G56690.1	GSMUA_Achr3P25040_001	AT3G56800.1	11346951
AT3G56690.1	GSMUA_Achr5P07820_001	AT3G56800.1	11346951
AT3G56690.1	GSMUA_Achr5P27590_001	AT3G56800.1	11346951
AT3G56690.1	GSMUA_Achr6P15990_001	AT3G56800.1	11346951
AT3G56690.1	GSMUA_Achr6P23670_001	AT3G56800.1	11346951
AT3G56690.1	GSMUA_Achr8P05790_001	AT3G56800.1	11346951
AT3G56690.1	GSMUA_Achr9P17280_001	AT3G56800.1	11346951

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018483	Potato	cytosol	39.17	57.32
EES09632	Sorghum	cytosol, plastid	64.5	39.17
HORVU1Hr1G015310.16	Barley	cytosol, plastid	65.17	38.91
TraesCS4B01G108300.1	Wheat	plastid	64.67	38.8
TraesCS1B01G089700.1	Wheat	cytosol, plastid	63.33	38.74
Zm00001d049140_P006	Maize	cytosol, plastid	64.83	38.71
TraesCS1D01G073600.1	Wheat	cytosol, plastid	64.67	38.61
TraesCS1A01G071300.1	Wheat	cytosol, plastid	64.67	38.61
TraesCS4A01G204700.1	Wheat	cytosol, plastid	64.33	38.37
HORVU4Hr1G016200.10	Barley	cytosol, plastid	64.17	38.27
TraesCS4D01G105500.2	Wheat	cytosol, plastid	64.0	38.17
GSMUA_Achr6P11080_001	Banana	plastid	37.17	37.23
CDX72118	Canola	plastid	57.67	36.65
GSMUA_AchrUn_...	Banana	cytosol	10.5	35.39
Solyc10g078320.1.1	Tomato	nucleus	57.83	35.16
Bra007262.1-P	Field mustard	plastid	57.17	35.0
VIT_08s0040g00910.t01	Wine grape	cytosol	60.67	34.37
GSMUA_Achr6P12250_001	Banana	cytosol	17.17	33.99
AT3G56690.1	Thale cress	cytosol, plastid	57.83	33.95
CDY56774	Canola	plastid	57.5	33.89
KRH66707	Soybean	plastid	59.0	33.84
GSMUA_Achr11P...	Banana	cytosol	17.67	32.52
GSMUA_Achr5P13290_001	Banana	cytosol	11.83	32.27
GSMUA_AchrUn_...	Banana	cytosol	20.67	30.92
GSMUA_Achr4P03720_001	Banana	cytosol	20.17	30.4
GSMUA_Achr7P17620_001	Banana	cytosol	20.5	30.0
GSMUA_AchrUn_...	Banana	cytosol	20.83	29.41
GSMUA_Achr7P04540_001	Banana	cytosol	38.5	29.24
KRG95054	Soybean	plastid	37.5	29.18
GSMUA_Achr8P16830_001	Banana	cytosol	20.67	29.18
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	39.33	29.17
GSMUA_Achr4P26800_001	Banana	cytosol	39.17	29.05
GSMUA_Achr5P04520_001	Banana	cytosol	19.5	28.89
GSMUA_Achr9P13230_001	Banana	cytosol	19.33	28.64
GSMUA_Achr3P04570_001	Banana	cytosol	20.17	28.61
GSMUA_Achr3P00250_001	Banana	cytosol	9.17	28.06
GSMUA_Achr4P03560_001	Banana	mitochondrion	36.17	27.75
GSMUA_Achr7P09950_001	Banana	cytosol	18.17	27.05
GSMUA_Achr9P23550_001	Banana	mitochondrion	36.33	27.05
GSMUA_Achr4P05840_001	Banana	cytosol	18.5	26.37
GSMUA_Achr4P05850_001	Banana	cytosol	18.5	26.18
GSMUA_Achr10P...	Banana	cytosol	18.0	25.71
GSMUA_Achr7P21960_001	Banana	cytosol	19.0	23.55
GSMUA_Achr3P00260_001	Banana	cytosol	18.67	22.95
GSMUA_Achr6P20030_001	Banana	cytosol	27.83	17.29
GSMUA_Achr11P...	Banana	cytosol	27.83	14.9

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr6G29120_001	EnsemblPlants:GSMUA_Achr6P29120_001
EnsemblPlants:GSMUA_Achr6T29120_001	UniProt:M0TB57	InterPro:P-loop_NTPase	PFAM:PF00004	PRINTS:PR00830	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF27	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0002959422
SEG:seg	:	:	:	:	:

Description

Putative Cell division cycle protein 48 homolog MJ1156 [Source:GMGC_GENE;Acc:GSMUA_Achr6G29120_001]

Coordinates

chr6:-:29414889..29420834

Molecular Weight (calculated)

67031.6 Da

IEP (calculated)

6.358

GRAVY (calculated)

0.003

Length

600 amino acids

Sequence
(BLAST)

001: MKYKSLYDNL WYKGVLLHGP PGTGKTSLAT SCARSVGASL FSINGPEVIS EYYGESEQAL REVFDSAKQA APSSFVVHDA IFSYLVFIDE LDAIAPTRKE
101: GSEELSLRIV ATLLKLMDEI NIKDRVLVIA TTNRPDSIDP ALRRPGRLDR EIEIGIIYLA HHLHDRLVHI EFIHIIFLEI ISLFLQILSL SHMPFMNTFH
201: VICNLISQNL IMNLARIAYW VPSPEHRLDI LCTLLNEIVH SLSIKEIQSL ALGTHGFVGA DLSALCNEAA MTALRRYIGH TCDPGLRKDE DVASVKMFLK
301: VTIEDFEKAK MKVRPSAMRE VMLELPKVRW EDVGGQSMIK RQLIEAVQWP QICPDAFIRL GIRPPRGLLM IGPPGCSKTL MARAVASEAK LNFLAVKGPE
401: LFSKWVGESE KAVRSLFAKA RANSPAIVFF DEIDGLAVTR GQDSDGTSVA DRVLSQLLVE MDGLDQKIGV TVIAATNRPD KIDPALLRPG RFDRLLDVQP
501: PDENDREDIF RIHMRNMPCS SDVSIKDLAQ LTEGYTGADI KLICREAALA ALEESLEISE ISMVHFKFGI SRVQPSDLKF YRELAAQFRR LVDNQSARGE

Best Arabidopsis Sequence Match ( AT3G56690.1 )
(BLAST)

0001: MPSKKKQSRT PSRLSNSEPP ASPRTPASST TSRDTDSINE EELRRSIEEA SAAFPCLLGK SAIIARVADV ASESIRGSKI WLSETSMVAA SLSPGSTVSV
0101: SLASPESRFS RSFPLSSIKA EYGDDSESII ADEPGNYFVL TTVFSSSKVF KDAVRISLNL CYGLGCPVSG RTVFVYPVSG PSLSDQFNGN GRSRYDDVNH
0201: LSLLACKELC LELTPFRNML QAKNAFESSY EQNGNGNSTP KTPANLQKFS SPRPKSPVSP IIEDSVFSCK QRFSSESSID LREVLSNESS KKLLQICASS
0301: WLYPCSLLYG NFVSVPILSE ICIFCVKRAD KRPSDTSNRN HAFMINQETK VYLHHTLDLA SEIQGRTFVQ GLQFDEGENV GCEISKLGGL SKEYAILRDI
0401: IDSSSIKNSL SSLGLRPTKG VLIHGPPGTG KTSLARTFAR HSGVNFFSVN GPEIISQYLG ESEKALDEVF RSASNATPAV VFIDDLDAIA PARKEGGEEL
0501: SQRMVATLLN LMDGISRTDG VVVIAATNRP DSIEPALRRP GRLDREIEIG VPSSTQRSDI LHIILRGMRH SLSNIQVEQL AMATHGFVGA DLSALCCEAA
0601: FVCLRRHLDQ SSSSSNLPLE EAPIAESSSN MSDISSDSSD SASSCITISA TTSGAQRSFS LDETVSLVAD DIQNNGNSCS EQMLRKQGEH TLSVGFEDFE
0701: NAKTKIRPSA MREVILEVPK VNWEDVGGQN EVKNQLMEAV EWPQKHQDAF KRIGTRPPSG ILMFGPPGCS KTLMARAVAS EAKLNFLAVK GPELFSKWVG
0801: ESEKAVRSLF AKARANAPSI IFFDEIDSLA SIRGKENDGV SVSDRVMSQL LVELDGLHQR VGVTVIAATN RPDKIDSALL RPGRFDRLLY VGPPNETDRE
0901: AILKIHLRKI PCSSDICLKE LASITKGYTG ADISLICREA AIAALEESLE MEEISMRHLK AAISQIEPTE ILSYKALSEK FQRLVHTDPQ REEEVTQPGN
1001: KSRSLWTPLR SVAMFLRRHI AS

Arabidopsis Description

CIP111Calmodulin-interacting protein 111 [Source:UniProtKB/Swiss-Prot;Acc:Q9LET7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.