Factsheet for Solyc01g109940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079514	Potato	cytosol	99.75	99.75
VIT_03s0038g04350.t01	Wine grape	cytosol	95.23	94.99
GSMUA_AchrUn_...	Banana	cytosol	94.47	93.77
TraesCS6D01G149500.1	Wheat	cytosol	83.67	92.5
EES06471	Sorghum	cytosol	92.21	91.75
Zm00001d053649_P002	Maize	cytosol, mitochondrion	92.21	91.75
GSMUA_Achr7P17620_001	Banana	cytosol	94.47	91.71
TraesCS6A01G162700.2	Wheat	cytosol, golgi	91.96	91.5
Zm00001d015788_P001	Maize	plasma membrane	91.96	91.5
TraesCS6B01G188500.1	Wheat	cytosol	91.96	91.5
Os02t0199900-01	Rice	nucleus, plasma membrane	91.71	91.25
GSMUA_Achr4P03720_001	Banana	cytosol	91.21	91.21
Zm00001d046539_P002	Maize	cytosol, mitochondrion	90.7	90.7
TraesCS7D01G375500.1	Wheat	cytosol	90.95	90.5
TraesCS7B01G280400.1	Wheat	cytosol, unclear	90.95	90.5
TraesCS7A01G378600.1	Wheat	cytosol	90.95	90.5
Os06t0607800-01	Rice	nucleus	90.95	90.27
EER88627	Sorghum	cytosol	90.2	90.2
HORVU6Hr1G032570.5	Barley	cytosol	89.2	86.8
Solyc10g054040.1.1	Tomato	cytosol, unclear	86.43	86.22
HORVU7Hr1G090380.3	Barley	cytosol	90.95	83.03
TraesCS7D01G532000.1	Wheat	cytosol	77.14	77.14
HORVU7Hr1G119300.13	Barley	cytosol	77.64	76.87
TraesCS7A01G545700.1	Wheat	cytosol	76.63	76.63
TraesCS7B01G468900.1	Wheat	cytosol	75.88	75.88
KRH51488	Soybean	mitochondrion	69.35	65.25
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	20.85	43.68
Solyc05g018590.2.1	Tomato	nucleus	44.22	42.21
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	44.22	42.21
Solyc03g123730.2.1	Tomato	nucleus	41.71	38.78
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	41.71	38.69
Solyc06g083620.2.1	Tomato	nucleus, plastid	42.46	38.06
Solyc06g082630.2.1	Tomato	cytosol, plastid	39.2	37.68
Solyc06g082660.2.1	Tomato	cytosol, nucleus	39.2	37.68
Solyc01g099760.2.1	Tomato	nucleus, plastid	38.94	36.64
Solyc05g012190.2.1	Tomato	cytosol	27.89	18.17
Solyc06g074980.2.1	Tomato	nucleus	34.67	17.14
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	34.42	17.02
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	34.42	16.96
Solyc09g008070.2.1	Tomato	cytosol, unclear	34.42	16.96
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	34.42	16.49
Solyc01g068330.2.1	Tomato	nucleus	30.65	14.86
Solyc10g078320.1.1	Tomato	nucleus	31.41	12.66
Solyc06g008730.2.1	Tomato	cytosol	27.39	11.73
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	28.39	10.02

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.4	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595
GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	UniProt:K4B3K7	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF58	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc01g109940.2	EnsemblPlants:Solyc01g109940.2.1	TIGRFAMs:TIGR01242	UniParc:UPI0002768BB3	:	:

Description

No Description!

Coordinates

chr1:-:96766703..96771912

Molecular Weight (calculated)

44707.2 Da

IEP (calculated)

8.415

GRAVY (calculated)

-0.359

Length

398 amino acids

Sequence
(BLAST)

001: MATEEDAVRR RTALADYRKK LLQHKELDAR VRTVRENLRA TKKEYAKTED DLKSLQSVGQ IIGEVLRPLD NERLIVKASS GPRYVVGCRS KVDKEKLTSG
101: TRVVLDMTTL TIMRALPREV DPVVYNMLHE DPGNISYSAV GGLSDQIREL RESIELPLMN PELFLRVGIK PPKGVLLYGP PGTGKTLLAR AIASNIDANF
201: LKVVSSAIID KYIGESARLI REMFNYARDH QPCIIFMDEI DAIGGRRFSE GTSADREIQR TLMELLNQLD GFDQLGKVKM IMATNRPDVL DPALLRPGRL
301: DRKIEIPLPN EQSRMEILKI HAAGIAKHGE IDYEAAVKLA EGFNGADMRN VCTEAGMFAI RAERDYVIHE DFMKAVRKLN EAKKLESSAH YSADFGKE

Best Arabidopsis Sequence Match ( AT1G45000.1 )
(BLAST)

001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE

Arabidopsis Description

RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.