Factsheet for Solyc05g012190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072919	Potato	cytosol	97.87	97.87
KRH70928	Soybean	cytosol	73.16	73.76
AT2G03670.1	Thale cress	cytosol	69.56	70.48
Bra017378.1-P	Field mustard	cytosol	68.09	68.99
CDY04161	Canola	cytosol	68.09	68.99
KXG26645	Sorghum	cytosol	62.19	66.9
Zm00001d025776_P002	Maize	cytosol	62.03	66.73
TraesCS2A01G355200.1	Wheat	cytosol	61.54	66.31
TraesCS2B01G373100.1	Wheat	cytosol	61.7	66.26
Os05t0376200-00	Rice	cytosol	42.39	66.24
HORVU2Hr1G086170.2	Barley	cytosol	61.37	65.91
TraesCS2D01G353100.1	Wheat	cytosol	61.21	65.85
Os04t0498800-01	Rice	cytosol	59.57	62.98
GSMUA_Achr6P11080_001	Banana	plastid	60.72	61.94
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	67.76	57.82
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	11.46	36.84
CDY02982	Canola	cytosol	65.14	33.76
Solyc06g074980.2.1	Tomato	nucleus	38.63	29.32
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	38.46	29.08
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	38.3	29.07
Solyc01g099760.2.1	Tomato	nucleus, plastid	19.8	28.61
Solyc09g008070.2.1	Tomato	cytosol, unclear	37.81	28.59
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	38.63	28.4
Solyc06g082630.2.1	Tomato	cytosol, plastid	19.15	28.26
Solyc06g082660.2.1	Tomato	cytosol, nucleus	19.15	28.26
Solyc01g109940.2.1	Tomato	nucleus	18.17	27.89
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	18.99	27.82
Solyc05g018590.2.1	Tomato	nucleus	18.99	27.82
Solyc06g083620.2.1	Tomato	nucleus, plastid	20.13	27.7
Solyc10g054040.1.1	Tomato	cytosol, unclear	18.0	27.57
Solyc03g123730.2.1	Tomato	nucleus	18.49	26.4
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	18.49	26.34
Solyc01g068330.2.1	Tomato	nucleus	34.37	25.58
Solyc10g078320.1.1	Tomato	nucleus	36.01	22.29
Solyc06g008730.2.1	Tomato	cytosol	27.66	18.19
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	26.84	14.54

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	UniProt:K4BXU2	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23077
PANTHER:PTHR23077:SF117	SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc05g012190.2	EnsemblPlants:Solyc05g012190.2.1	TMHMM:TMhelix
UniParc:UPI0002765683	SEG:seg	:	:	:	:

Description

Cell division control protein 48 homolog B [Source:Projected from Arabidopsis thaliana (AT2G03670) UniProtKB/Swiss-Prot;Acc:Q9ZPR1]

Coordinates

chr5:-:5456884..5462327

Molecular Weight (calculated)

66743.9 Da

IEP (calculated)

7.618

GRAVY (calculated)

-0.176

Length

611 amino acids

Sequence
(BLAST)

001: MESSSGSSSC AGEWKAEEAI AGNAEALRVL RELITYPLLY SAESRKLGLK WPRGLLLYGP PGTGKTSLVR AVVQECGAHL IVISPHSVHR AHAGESEKIL
101: REAFSEASSH AKLGKPSVIF LDEIDALCPR RDSRREQEIR VASQLFMLMD SIKSSSTSVS HVVVVASTNR PDAIDPALRR AGRFDAEIEV TTPTEEERMH
201: ILKLYTKKLQ LDASVDLRAV AASCNGYVGA DLEALCREAA MSAVRKCSDS NLDDDSYSIN MEDWKHARSV VGPSITRGVT VEIPKVSWED IGGLKDIKKK
301: LQQAVEWPLK HSEAFERLGV SPSRGILLHG PPGCSKTTLA KAAAHAAQAS FFSLSGAELY SMYVGEGEAL LRNAFRRARL AAPSIIFFDE ADVVATKRGG
401: SSSGSSTVGE RLLSTLLTEM DGLEQAKGIL VLAATNRPHA IDAALMRPGR FDLVLYVPPP DLEARFEVLS VHTRDMKLNN DVNLRQIAED TELFTGAELE
501: GLCREAGIVA LRENISATVV SDRHFQTVKK SLKPALTKEE VASYSSFMNN RSERSAHSFQ SISKKRDNKP TKNLLVFATP VTITVISIAM YIGVRYFLMP
601: TETSTRELTS T

Best Arabidopsis Sequence Match ( AT2G03670.1 )
(BLAST)

001: MLETESSVCD NIAGNEKWRA EAEIGGNERA LQALRELIIF PFRYPLEART LGLKWPRGLL LYGPPGTGKT SLVRAVVQEC DAHLIVLSPH SVHRAHAGES
101: EKVLREAFAE ASSHAVSDKP SVIFIDEIDV LCPRRDARRE QDVRIASQLF TLMDSNKPSS SAPRVVVVAS TNRVDAIDPA LRRAGRFDAL VEVSTPNEED
201: RLKILQLYTK KVNLDPSVDL QAIAISCNGY VGADLEALCR EATISASKRS SDSLILTSQD FKIAKSVVGP SINRGITVEI PKVTWDDVGG LKDLKKKLQQ
301: AVEWPIKHSA AFVKMGISPM RGILLHGPPG CSKTTLAKAA ANAAQASFFS LSCAELFSMY VGEGEALLRN TFQRARLASP SIIFFDEADV VACKRGDESS
401: SNSSTVGERL LSTLLTEMDG LEEAKGILVL AATNRPYAID AALMRPGRFD LVLYVPPPDL EARFEILQVH TRNMTLGDDV DLRKIAEETD LFTGAELEGL
501: CRESGTVSLR ENIAATAVFN RHFQTAKSSL KPALTIEEVE TYSSFRKAAK RSDSKPIPIN KKKATSTVFG FSWQLGVLSL LLLATGNYYF NHTKHELLVA
601: SAT

Arabidopsis Description

CDC48BCell division control protein 48 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.