Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G188500.1 | Wheat | cytosol | 99.17 | 89.25 |
| TraesCS6A01G162700.2 | Wheat | cytosol, golgi | 99.17 | 89.25 |
| Zm00001d053649_P002 | Maize | cytosol, mitochondrion | 98.33 | 88.5 |
| EES06471 | Sorghum | cytosol | 98.33 | 88.5 |
| Zm00001d015788_P001 | Maize | plasma membrane | 98.06 | 88.25 |
| Os02t0199900-01 | Rice | nucleus, plasma membrane | 96.94 | 87.25 |
| TraesCS7D01G375500.1 | Wheat | cytosol | 95.28 | 85.75 |
| VIT_18s0001g13090.t01 | Wine grape | cytosol | 93.61 | 84.67 |
| KRH61120 | Soybean | endoplasmic reticulum | 93.33 | 84.42 |
| KRH51796 | Soybean | cytosol | 93.33 | 84.42 |
| HORVU6Hr1G032570.5 | Barley | cytosol | 95.56 | 84.11 |
| KRH05868 | Soybean | cytosol, nucleus | 93.06 | 83.96 |
| VIT_03s0038g04350.t01 | Wine grape | cytosol | 93.06 | 83.96 |
| KRH15139 | Soybean | cytosol, endoplasmic reticulum, nucleus | 92.78 | 83.71 |
| Solyc01g109940.2.1 | Tomato | nucleus | 92.5 | 83.67 |
| PGSC0003DMT400079514 | Potato | cytosol | 92.22 | 83.42 |
| GSMUA_AchrUn_... | Banana | cytosol | 92.78 | 83.29 |
| GSMUA_Achr4P03720_001 | Banana | cytosol | 91.94 | 83.17 |
| AT1G45000.1 | Thale cress | cytosol | 91.11 | 82.21 |
| CDX71534 | Canola | cytosol | 90.83 | 81.95 |
| Bra033655.1-P | Field mustard | cytosol | 90.83 | 81.95 |
| GSMUA_Achr7P17620_001 | Banana | cytosol | 93.06 | 81.71 |
| CDY22373 | Canola | cytosol | 90.56 | 81.7 |
| CDY02428 | Canola | cytosol, extracellular | 90.56 | 81.7 |
| Bra035338.1-P | Field mustard | cytosol | 90.56 | 81.7 |
| AT5G43010.1 | Thale cress | cytosol | 90.28 | 81.45 |
| CDY25226 | Canola | cytosol | 90.28 | 81.45 |
| Solyc10g054040.1.1 | Tomato | cytosol, unclear | 84.44 | 76.19 |
| TraesCS7D01G532000.1 | Wheat | cytosol | 79.44 | 71.86 |
| CDY20370 | Canola | cytosol | 50.0 | 66.91 |
| CDY39032 | Canola | cytosol | 42.78 | 61.35 |
| KRH51488 | Soybean | mitochondrion | 70.83 | 60.28 |
| KRH00031 | Soybean | plastid | 56.11 | 58.55 |
| CDY39033 | Canola | cytosol | 61.94 | 54.93 |
| CDY20371 | Canola | cytosol, plastid | 61.11 | 50.0 |
| TraesCS6D01G166700.1 | Wheat | cytosol, golgi | 45.56 | 39.23 |
| TraesCS7D01G350300.1 | Wheat | cytosol | 45.28 | 38.53 |
| TraesCS7D01G157200.1 | Wheat | cytosol | 44.72 | 37.79 |
| TraesCS6D01G326400.1 | Wheat | cytosol | 44.72 | 37.79 |
| TraesCS2D01G083900.1 | Wheat | golgi | 41.94 | 36.39 |
| TraesCS2D01G476000.1 | Wheat | cytosol | 41.67 | 35.97 |
| Bra008198.1-P | Field mustard | cytosol | 61.67 | 35.35 |
| TraesCS4D01G190600.1 | Wheat | cytosol, golgi | 44.17 | 35.33 |
| TraesCS2D01G087900.1 | Wheat | cytosol, golgi | 43.89 | 35.19 |
| TraesCS7D01G134800.1 | Wheat | cytosol | 41.67 | 34.97 |
| TraesCS3D01G417000.1 | Wheat | cytosol | 41.94 | 34.79 |
| TraesCS1D01G194500.1 | Wheat | cytosol | 24.44 | 33.21 |
| TraesCS1D01G340100.1 | Wheat | cytosol | 23.33 | 32.81 |
| TraesCS3D01G153300.1 | Wheat | cytosol | 20.0 | 32.14 |
| TraesCS2D01G471200.1 | Wheat | cytosol | 38.89 | 30.91 |
| TraesCS2D01G353100.1 | Wheat | cytosol | 30.56 | 19.37 |
| TraesCS3D01G153800.1 | Wheat | cytosol | 32.22 | 17.06 |
| TraesCS3D01G443600.1 | Wheat | mitochondrion | 33.61 | 16.18 |
| TraesCS5D01G081900.1 | Wheat | mitochondrion | 33.33 | 16.15 |
| TraesCS1D01G253100.1 | Wheat | cytosol | 34.72 | 15.62 |
| TraesCS4D01G267800.1 | Wheat | cytosol | 35.28 | 15.62 |
| TraesCS3D01G154000.1 | Wheat | cytosol | 34.17 | 15.61 |
| TraesCS1D01G399100.1 | Wheat | cytosol | 34.17 | 15.59 |
| TraesCS1D01G223800.1 | Wheat | cytosol | 34.44 | 15.5 |
| TraesCS1D01G248000.1 | Wheat | cytosol | 33.89 | 15.46 |
| TraesCS4D01G267600.2 | Wheat | cytosol | 35.0 | 15.4 |
| TraesCS3D01G153900.1 | Wheat | cytosol | 33.33 | 15.23 |
| TraesCS7D01G023600.1 | Wheat | mitochondrion | 31.67 | 14.52 |
| TraesCS6D01G360700.1 | Wheat | cytosol | 29.17 | 14.27 |
| TraesCS4D01G105500.2 | Wheat | cytosol, plastid | 33.06 | 11.83 |
| TraesCS1D01G073600.1 | Wheat | cytosol, plastid | 32.5 | 11.64 |
| TraesCS2D01G458300.3 | Wheat | mitochondrion | 28.89 | 11.15 |
| TraesCS7D01G277100.1 | Wheat | cytosol, peroxisome, plastid | 27.78 | 9.17 |
| TraesCS5D01G306600.2 | Wheat | mitochondrion | 25.56 | 8.41 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.4 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 |
| GO:GO:0036402 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | InterPro:PSMC6 | PANTHER:PTHR23073 |
| PANTHER:PTHR23073:SF59 | SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | EnsemblPlantsGene:TraesCS6D01G149500 | EnsemblPlants:TraesCS6D01G149500.1 |
| TIGR:cd00009 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:123149574..123153506
Molecular Weight (calculated)
39865.2 Da
IEP (calculated)
7.104
GRAVY (calculated)
-0.259
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGEDAAAA CRRTAISDYR KKLLNCRELE SRVGTVIVKA SSGPRYVVGC RSKVDKEKLT SGTRVVLDMT TLTIMRTLPR EVDPVVYNML HEDPGNVSYS
101: AVGGLSDQIR ELRESIELPL MNPELFLRVG IKPPKGVLLY GPPGTGKTLL ARAIASNIDA NFLKIVSSAI IDKYIGESAR LIREMFGYAR DHQPCIIFMD
201: EIDAIGGRRF SEGTSADREI QRTLMELLNQ LDGFDELGKV KMIMATNRPD VLDPALLRPG RLDRKIEIPL PNEQSRTEVL KIHAAGIAKH GEIDYEAVVK
301: LAEGFNGADL RNVCTEAGMS AIRAERDYVV HEDFMKAVRK LNDAKKLESS AHYSADFGKD
101: AVGGLSDQIR ELRESIELPL MNPELFLRVG IKPPKGVLLY GPPGTGKTLL ARAIASNIDA NFLKIVSSAI IDKYIGESAR LIREMFGYAR DHQPCIIFMD
201: EIDAIGGRRF SEGTSADREI QRTLMELLNQ LDGFDELGKV KMIMATNRPD VLDPALLRPG RLDRKIEIPL PNEQSRTEVL KIHAAGIAKH GEIDYEAVVK
301: LAEGFNGADL RNVCTEAGMS AIRAERDYVV HEDFMKAVRK LNDAKKLESS AHYSADFGKD
001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE
Arabidopsis Description
RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.