Subcellular Localization
min:
: max
Winner_takes_all: golgi, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G105700.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS2A01G090000.1 | Wheat | cytosol | 99.78 | 99.78 |
| Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 98.0 | 98.21 |
| Zm00001d022573_P001 | Maize | cytosol, extracellular, plasma membrane | 96.66 | 97.09 |
| EER99961 | Sorghum | cytosol | 96.66 | 97.09 |
| TraesCS4D01G190600.1 | Wheat | cytosol, golgi | 95.99 | 95.78 |
| GSMUA_Achr4P05850_001 | Banana | cytosol | 89.31 | 94.58 |
| GSMUA_Achr4P05840_001 | Banana | cytosol | 87.53 | 93.35 |
| Zm00001d007215_P001 | Maize | cytosol | 95.99 | 92.89 |
| KRG95799 | Soybean | cytosol, nucleus | 92.2 | 92.83 |
| KRH67524 | Soybean | nucleus | 91.98 | 92.6 |
| AT4G29040.1 | Thale cress | cytosol | 91.31 | 92.55 |
| KRH19693 | Soybean | cytosol | 91.31 | 92.55 |
| KRH32292 | Soybean | cytosol, nucleus | 91.31 | 92.55 |
| CDY35245 | Canola | cytosol | 91.09 | 92.33 |
| Bra011079.1-P | Field mustard | cytosol | 91.09 | 92.33 |
| CDX97472 | Canola | cytosol | 91.31 | 92.13 |
| PGSC0003DMT400040872 | Potato | cytosol | 91.09 | 92.12 |
| CDY06847 | Canola | cytosol | 90.87 | 92.1 |
| HORVU2Hr1G014770.2 | Barley | cytosol, plastid | 90.42 | 92.06 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 91.09 | 91.91 |
| CDY14224 | Canola | cytosol | 91.09 | 91.91 |
| Bra010342.1-P | Field mustard | cytosol | 91.09 | 91.91 |
| AT2G20140.1 | Thale cress | cytosol | 90.65 | 91.87 |
| Solyc06g083620.2.1 | Tomato | nucleus, plastid | 90.65 | 91.67 |
| CDX92914 | Canola | cytosol, extracellular | 90.42 | 91.65 |
| PGSC0003DMT400051744 | Potato | cytosol | 90.2 | 91.22 |
| CDY59958 | Canola | cytosol | 62.14 | 76.65 |
| Bra024165.1-P | Field mustard | cytosol | 55.01 | 76.47 |
| TraesCS2D01G083900.1 | Wheat | golgi | 42.32 | 45.78 |
| TraesCS2D01G476000.1 | Wheat | cytosol | 42.32 | 45.56 |
| TraesCS6D01G149500.1 | Wheat | cytosol | 35.19 | 43.89 |
| TraesCS3D01G417000.1 | Wheat | cytosol | 40.31 | 41.71 |
| TraesCS6D01G166700.1 | Wheat | cytosol, golgi | 38.53 | 41.39 |
| TraesCS7D01G350300.1 | Wheat | cytosol | 38.98 | 41.37 |
| TraesCS7D01G134800.1 | Wheat | cytosol | 39.42 | 41.26 |
| TraesCS7D01G375500.1 | Wheat | cytosol | 36.75 | 41.25 |
| TraesCS7D01G532000.1 | Wheat | cytosol | 35.86 | 40.45 |
| TraesCS7D01G157200.1 | Wheat | cytosol | 36.75 | 38.73 |
| TraesCS6D01G326400.1 | Wheat | cytosol | 36.3 | 38.26 |
| TraesCS2D01G471200.1 | Wheat | cytosol | 38.08 | 37.75 |
| TraesCS1D01G194500.1 | Wheat | cytosol | 19.15 | 32.45 |
| TraesCS1D01G340100.1 | Wheat | cytosol | 17.37 | 30.47 |
| TraesCS3D01G153300.1 | Wheat | cytosol | 14.92 | 29.91 |
| TraesCS2D01G353100.1 | Wheat | cytosol | 27.62 | 21.83 |
| TraesCS3D01G153800.1 | Wheat | cytosol | 25.84 | 17.06 |
| TraesCS3D01G443600.1 | Wheat | mitochondrion | 27.17 | 16.31 |
| TraesCS7D01G023600.1 | Wheat | mitochondrion | 28.51 | 16.31 |
| TraesCS5D01G081900.1 | Wheat | mitochondrion | 26.28 | 15.88 |
| TraesCS4D01G267800.1 | Wheat | cytosol | 28.06 | 15.5 |
| TraesCS1D01G399100.1 | Wheat | cytosol | 27.17 | 15.46 |
| TraesCS4D01G267600.2 | Wheat | cytosol | 27.84 | 15.28 |
| TraesCS1D01G223800.1 | Wheat | cytosol | 27.17 | 15.25 |
| TraesCS1D01G253100.1 | Wheat | cytosol | 26.95 | 15.12 |
| TraesCS1D01G248000.1 | Wheat | cytosol | 26.5 | 15.08 |
| TraesCS3D01G154000.1 | Wheat | cytosol | 26.28 | 14.97 |
| TraesCS3D01G153900.1 | Wheat | cytosol | 26.06 | 14.85 |
| TraesCS6D01G360700.1 | Wheat | cytosol | 22.94 | 13.99 |
| TraesCS2D01G458300.3 | Wheat | mitochondrion | 26.28 | 12.65 |
| TraesCS1D01G073600.1 | Wheat | cytosol, plastid | 28.29 | 12.64 |
| TraesCS4D01G105500.2 | Wheat | cytosol, plastid | 27.62 | 12.33 |
| TraesCS7D01G277100.1 | Wheat | cytosol, peroxisome, plastid | 23.61 | 9.72 |
| TraesCS5D01G306600.2 | Wheat | mitochondrion | 23.16 | 9.51 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.2 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | InterPro:26S_subunit_4 | Gene3D:3.40.50.300 |
| InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0030163 | GO:GO:0036402 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23073 |
| PANTHER:PTHR23073:SF42 | SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | EnsemblPlantsGene:TraesCS2D01G087900 | EnsemblPlants:TraesCS2D01G087900.1 |
| TIGR:cd00009 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:38065139..38068558
Molecular Weight (calculated)
49606.0 Da
IEP (calculated)
6.074
GRAVY (calculated)
-0.413
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQGTPGGMG KQGGAPGDRG KPGGDGDKKD KKFEPPAAPS RVGRKQRRQK GPEAAARLPG VAPLSKCRLR LLKLDRVKDY LLMEEEFVAA QERLRPTEEK
101: TEEDRSKVDD LRGTPMSVGS LEEIIDESHA IVSSSVGPEY YVGILSFVDK DQLEPGCSIL MHNKVLSVVG ILQDEVDPMV SVMKVEKAPL ESYADIGGLD
201: AQIQEIKEAV ELPLTHPELY EDIGIRPPKG VILYGEPGTG KTLLAKAVAN STSATFLRVV GSELIQKYLG DGPKLVRELF RVADELSPSI VFIDEIDAVG
301: TKRYDAHSGG EREIQRTMLE LLNQLDGFDS RGDVKVILAT NRIESLDPAL LRPGRIDRKI EFPLPDIKTR RRIFQIHTAK MTLSDDVNLE EFVMTKDEFS
401: GADIKAICTE SGLLALRERR MKVTHADFKK AKEKVMFKKK EGVPEGLYM
101: TEEDRSKVDD LRGTPMSVGS LEEIIDESHA IVSSSVGPEY YVGILSFVDK DQLEPGCSIL MHNKVLSVVG ILQDEVDPMV SVMKVEKAPL ESYADIGGLD
201: AQIQEIKEAV ELPLTHPELY EDIGIRPPKG VILYGEPGTG KTLLAKAVAN STSATFLRVV GSELIQKYLG DGPKLVRELF RVADELSPSI VFIDEIDAVG
301: TKRYDAHSGG EREIQRTMLE LLNQLDGFDS RGDVKVILAT NRIESLDPAL LRPGRIDRKI EFPLPDIKTR RRIFQIHTAK MTLSDDVNLE EFVMTKDEFS
401: GADIKAICTE SGLLALRERR MKVTHADFKK AKEKVMFKKK EGVPEGLYM
001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
Arabidopsis Description
RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.