Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 87.1 | 66.1 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 61.94 | 65.53 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 91.45 | 65.4 |
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 76.77 | 57.28 |
| Os09t0326800-01 | Rice | plasma membrane | 64.84 | 45.12 |
| Os06t0699900-01 | Rice | plasma membrane | 65.0 | 44.73 |
| TraesCS6D01G105500.1 | Wheat | golgi | 63.23 | 43.8 |
| Solyc07g053650.2.1 | Tomato | nucleus | 56.29 | 42.46 |
| GSMUA_Achr11P... | Banana | cytosol | 60.0 | 41.89 |
| KRH55899 | Soybean | endoplasmic reticulum, nucleus | 57.1 | 40.0 |
| KRH25643 | Soybean | endoplasmic reticulum, nucleus | 57.1 | 40.0 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 53.23 | 39.62 |
| CDY31952 | Canola | plasma membrane | 54.52 | 39.49 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 56.61 | 39.44 |
| PGSC0003DMT400024306 | Potato | cytosol | 56.29 | 38.95 |
| AT4G28470.1 | Thale cress | cytosol | 55.32 | 38.5 |
| AT4G08140.1 | Thale cress | cytosol | 5.16 | 38.1 |
| AT2G20580.1 | Thale cress | cytosol | 54.68 | 38.05 |
| CDY38389 | Canola | cytosol, extracellular | 54.68 | 38.0 |
| Bra011030.1-P | Field mustard | cytosol | 54.52 | 37.93 |
| CDY35187 | Canola | cytosol, extracellular | 54.52 | 37.89 |
| Bra024200.1-P | Field mustard | cytosol | 54.35 | 37.82 |
| CDY29907 | Canola | extracellular | 54.35 | 37.82 |
| CDY05774 | Canola | cytosol | 54.52 | 37.72 |
| CDX92875 | Canola | extracellular | 54.19 | 37.71 |
| Solyc10g008180.1.1 | Tomato | plastid | 43.39 | 36.8 |
| Bra010366.1-P | Field mustard | cytosol | 51.77 | 36.23 |
| CDY14239 | Canola | cytosol, extracellular | 51.61 | 36.04 |
| CDX97442 | Canola | cytosol | 51.29 | 36.01 |
| PGSC0003DMT400056260 | Potato | cytosol | 10.16 | 35.0 |
| Solyc10g008170.2.1 | Tomato | cytosol | 11.29 | 34.65 |
| KRH30269 | Soybean | cytosol | 10.0 | 30.24 |
| KRH57675 | Soybean | cytosol | 11.13 | 22.77 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 10.48 | 22.26 |
| CDY72396 | Canola | cytosol | 5.0 | 21.53 |
| CDX99107 | Canola | cytosol | 8.23 | 19.69 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 4.52 | 19.31 |
| CDY33144 | Canola | extracellular | 9.68 | 19.17 |
| CDY65736 | Canola | extracellular | 10.65 | 16.26 |
| Bra003811.1-P | Field mustard | endoplasmic reticulum | 5.81 | 14.63 |
| TraesCS1D01G351400.1 | Wheat | cytosol, endoplasmic reticulum | 15.32 | 9.48 |
| TraesCS2D01G427700.2 | Wheat | endoplasmic reticulum, plasma membrane | 15.32 | 9.21 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G413800.1 | EnsemblPlantsGene:TraesCS7D01G413800 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:IPR011989 | InterPro:Proteasome/cyclosome_rpt | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 | PFAM:PF01851 |
| SEG:seg | SUPFAM:SSF48371 | MapMan:19.2.6.2.2.1 | : | : | : |
Description
No Description!
Coordinates
chr7D:+:532257372..532262817
Molecular Weight (calculated)
68291.7 Da
IEP (calculated)
5.303
GRAVY (calculated)
0.036
Length
620 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSVPKPLKF LRAHYGTLKT CFERMQDSEQ QKKHMADILS VLALTMSAEG ERESLKYCMM GSLVDICSWG HEYVRNLAFE IGKEWKFNGS STPIESEINL
101: VLEIVKFHMK HNAETEALDL LMEVGYLEML SDEKKEEYLT MLLHLVDSTN YKRACLYLTS CSKYLSTPDH EATLGTAYDM YMKFRDLASA LRIALLVDDH
201: KYCGQNVKMK MVFEETEDFS LKQQFAFMIA RYGLSVEIDD EMVADENEKN ALQEVVFNTK LSAGYHILAR DIGVMEPKSP EDIYKVHLIG GRRAKSSSLD
301: SARPNLAAIF VNAFVNAGYC QDKLMTAIPD SLLFKNNELW KASAVASLGM IHLWDTDSGF AKLDKYLHSN DTNVVAGTLL GIGIVSYGVK KDYDLAHALI
401: SEYSTGATSI TRIGGILGLG IAYAGSQKDE LKSHFSITMS NSQTPFEELV FSSISLGLVF VGSCNEEIAE SIISVLKNHS KELTEPIIHL LPVALGLLYL
501: GKQEMVVATA AKVSETLEEP LKKYCGLTLT SLAYAGTGNV LKVQELLCSC SDKLVKGGSD QGPAVLGIAL IAMAEGLGAE MSVRSLEQLL QYGDCSIRRA
601: VPLALGMLCV SNPKAVVVDT
101: VLEIVKFHMK HNAETEALDL LMEVGYLEML SDEKKEEYLT MLLHLVDSTN YKRACLYLTS CSKYLSTPDH EATLGTAYDM YMKFRDLASA LRIALLVDDH
201: KYCGQNVKMK MVFEETEDFS LKQQFAFMIA RYGLSVEIDD EMVADENEKN ALQEVVFNTK LSAGYHILAR DIGVMEPKSP EDIYKVHLIG GRRAKSSSLD
301: SARPNLAAIF VNAFVNAGYC QDKLMTAIPD SLLFKNNELW KASAVASLGM IHLWDTDSGF AKLDKYLHSN DTNVVAGTLL GIGIVSYGVK KDYDLAHALI
401: SEYSTGATSI TRIGGILGLG IAYAGSQKDE LKSHFSITMS NSQTPFEELV FSSISLGLVF VGSCNEEIAE SIISVLKNHS KELTEPIIHL LPVALGLLYL
501: GKQEMVVATA AKVSETLEEP LKKYCGLTLT SLAYAGTGNV LKVQELLCSC SDKLVKGGSD QGPAVLGIAL IAMAEGLGAE MSVRSLEQLL QYGDCSIRRA
601: VPLALGMLCV SNPKAVVVDT
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.