Factsheet for Solyc10g008180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008370.2.1
Solyc01g099760.2.1
Solyc01g111700.1.1
Solyc02g070510.2.1
Solyc02g081700.1.1
Solyc02g084920.2.1
Solyc04g012040.2.1
Solyc04g051370.2.1
Solyc04g079200.2.1
Solyc04g080590.2.1
Solyc05g013030.1.1
Solyc05g018570.2.1
Solyc05g018590.2.1
Solyc05g053140.2.1
Solyc05g053650.2.1
Solyc06g063140.2.1
Solyc06g063220.2.1
Solyc06g082630.2.1
Solyc06g082660.2.1
Solyc06g083620.2.1
Solyc07g009140.2.1
Solyc07g047770.2.1
Solyc07g053650.2.1
Solyc07g054690.1.1
Solyc08g016510.2.1
Solyc08g066330.1.1
Solyc08g082700.2.1
Solyc09g042290.1.1
Solyc09g082320.2.1
Solyc09g090720.2.1
Solyc09g091750.2.1
Solyc10g008180.1.1
Solyc11g012670.1.1
Solyc11g069150.1.1
Solyc12g009140.1.1
Solyc12g055760.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20580.1	Solyc05g053650.2.1	AT1G04810.1	20706207
AT2G20580.1	Solyc09g091750.2.1	AT1G04810.1	20706207
AT2G20580.1	Solyc01g111700.1.1	AT1G20200.1	20706207
AT2G20580.1	Solyc05g013030.1.1	AT1G29150.1	20706207
AT2G20580.1	Solyc06g063220.2.1	AT1G51650.1	20706207
AT2G20580.1	Solyc12g055760.1.1	AT1G51650.1	20706207
AT2G20580.1	Solyc06g063140.2.1	AT1G53750.1	20706207
AT2G20580.1	Solyc08g082700.2.1	AT1G64520.1	20706207
AT2G20580.1	Solyc06g083620.2.1	AT2G20140.1	20706207
AT2G20580.1	Solyc05g053650.2.1	AT2G32730.1	20706207
AT2G20580.1	Solyc09g091750.2.1	AT2G32730.1	20706207
AT2G20580.1	Solyc01g099760.2.1	AT3G05530.1	20706207
AT2G20580.1	Solyc01g008370.2.1	AT3G11270.1	20706207
AT2G20580.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT2G20580.1	Solyc09g042290.1.1	AT4G16390.1	20706207
AT2G20580.1	Solyc11g012670.1.1	AT4G16390.1	20706207
AT2G20580.1	Solyc07g009140.2.1	AT4G24820.1	20706207
AT2G20580.1	Solyc07g054690.1.1	AT4G28230.1	20706207
AT2G20580.1	Solyc01g008370.2.1	AT5G05780.1	20706207
AT2G20580.1	Solyc05g018570.2.1	AT5G20000.1	20706207
AT2G20580.1	Solyc05g018590.2.1	AT5G20000.1	20706207
AT2G20580.1	Solyc04g079200.2.1	AT5G23540.1	20706207
AT2G20580.1	Solyc07g047770.2.1	AT5G35750.1	18642946
AT2G20580.1	Solyc05g053140.2.1	AT5G45620.1	20706207
AT2G20580.1	Solyc09g090720.2.1	AT5G45620.1	20706207
AT2G20580.1	Solyc06g082630.2.1	AT5G58290.1	20706207
AT2G20580.1	Solyc06g082660.2.1	AT5G58290.1	20706207
AT4G28470.1	Solyc05g053650.2.1	AT1G04810.1	14623884
AT4G28470.1	Solyc09g091750.2.1	AT1G04810.1	14623884
AT4G28470.1	Solyc01g111700.1.1	AT1G20200.1	14623884
AT4G28470.1	Solyc05g013030.1.1	AT1G29150.1	14623884
AT4G28470.1	Solyc06g063140.2.1	AT1G53750.1	14623884
AT4G28470.1	Solyc02g070510.2.1	AT1G53850.1	14623884
AT4G28470.1	Solyc08g016510.2.1	AT1G53850.1	14623884
AT4G28470.1	Solyc11g069150.1.1	AT1G56450.1	14623884
AT4G28470.1	Solyc08g082700.2.1	AT1G64520.1	14623884
AT4G28470.1	Solyc01g111700.1.1	AT1G75990.1	14623884
AT4G28470.1	Solyc12g009140.1.1	AT2G05840.1	14623884
AT4G28470.1	Solyc07g053650.2.1	AT2G20580.1	14623884
AT4G28470.1	Solyc10g008180.1.1	AT2G20580.1	14623884
AT4G28470.1	Solyc05g053650.2.1	AT2G32730.1	14623884
AT4G28470.1	Solyc09g091750.2.1	AT2G32730.1	14623884
AT4G28470.1	Solyc01g099760.2.1	AT3G05530.1	14623884
AT4G28470.1	Solyc02g070510.2.1	AT3G14290.1	14623884
AT4G28470.1	Solyc08g016510.2.1	AT3G14290.1	14623884
AT4G28470.1	Solyc02g081700.1.1	AT3G22110.1	14623884
AT4G28470.1	Solyc09g082320.2.1	AT3G22630.1	14623884
AT4G28470.1	Solyc02g084920.2.1	AT3G60820.1	14623884
AT4G28470.1	Solyc07g009140.2.1	AT4G24820.1	14623884
AT4G28470.1	Solyc07g053650.2.1	AT4G28470.1	14623884
AT4G28470.1	Solyc10g008180.1.1	AT4G28470.1	14623884
AT4G28470.1	Solyc06g083620.2.1	AT4G29040.1	14623884
AT4G28470.1	Solyc01g008370.2.1	AT5G05780.1	14623884
AT4G28470.1	Solyc05g018570.2.1	AT5G19990.1	14623884
AT4G28470.1	Solyc05g018590.2.1	AT5G19990.1	14623884
AT4G28470.1	Solyc05g018570.2.1	AT5G20000.1	14623884
AT4G28470.1	Solyc05g018590.2.1	AT5G20000.1	14623884
AT4G28470.1	Solyc04g079200.2.1	AT5G23540.1	14623884
AT4G28470.1	Solyc12g009140.1.1	AT5G35590.1	14623884
AT4G28470.1	Solyc04g080590.2.1	AT5G42790.1	14623884
AT4G28470.1	Solyc05g053140.2.1	AT5G45620.1	14623884
AT4G28470.1	Solyc09g090720.2.1	AT5G45620.1	14623884
AT4G28470.1	Solyc06g082630.2.1	AT5G58290.1	14623884
AT4G28470.1	Solyc06g082660.2.1	AT5G58290.1	14623884
AT4G28470.1	Solyc04g012040.2.1	AT5G64760.1	14623884
AT4G28470.1	Solyc04g051370.2.1	AT5G64760.1	14623884

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053650.2.1	Tomato	nucleus	75.92	67.52
VIT_12s0028g03130.t01	Wine grape	cytosol	73.32	60.22
KRH25643	Soybean	endoplasmic reticulum, nucleus	72.64	60.0
KRH55899	Soybean	endoplasmic reticulum, nucleus	72.5	59.89
KRH57774	Soybean	endoplasmic reticulum, plasma membrane	23.12	57.88
AT2G20580.1	Thale cress	cytosol	69.63	57.13
AT4G28470.1	Thale cress	cytosol	69.22	56.79
Bra024200.1-P	Field mustard	cytosol	69.22	56.79
CDY29907	Canola	extracellular	69.08	56.68
CDX92875	Canola	extracellular	69.08	56.68
GSMUA_Achr11P...	Banana	cytosol	68.67	56.53
Bra011030.1-P	Field mustard	cytosol	68.81	56.45
CDY35187	Canola	cytosol, extracellular	68.81	56.39
Bra036488.1-P	Field mustard	cytosol, extracellular, plasma membrane	64.16	56.3
CDY38389	Canola	cytosol, extracellular	68.67	56.28
CDY05774	Canola	cytosol	68.95	56.25
CDY31952	Canola	plasma membrane	64.3	54.91
Zm00001d053881_P001	Maize	mitochondrion, plastid	66.89	54.82
EES04513	Sorghum	cytosol	67.03	54.81
Os02t0146700-02	Rice	plasma membrane	67.31	54.79
Zm00001d015259_P001	Maize	cytosol	66.48	54.61
TraesCS6D01G105500.1	Wheat	golgi	66.76	54.53
TraesCS6A01G116500.1	Wheat	golgi, unclear	66.76	54.53
HORVU6Hr1G021020.1	Barley	cytosol	66.89	54.45
Bra010366.1-P	Field mustard	cytosol	65.25	53.84
TraesCS6B01G144500.1	Wheat	cytosol	66.48	53.76
Os09t0326800-01	Rice	plasma membrane	65.53	53.76
CDY14239	Canola	cytosol, extracellular	65.25	53.72
CDX97442	Canola	cytosol	64.57	53.45
Os06t0699900-01	Rice	plasma membrane	65.8	53.39
TraesCS7A01G421600.1	Wheat	mitochondrion	55.95	50.06
TraesCS7D01G413900.1	Wheat	mitochondrion	56.77	49.94
TraesCS7B01G321900.1	Wheat	cytosol	56.36	47.52
TraesCS7B01G322000.1	Wheat	cytosol	57.05	47.39
TraesCS7A01G421700.1	Wheat	cytosol	56.77	47.16
TraesCS7D01G413800.1	Wheat	cytosol	36.8	43.39
HORVU7Hr1G097500.16	Barley	endoplasmic reticulum, golgi, plasma membrane	32.15	40.1
GSMUA_Achr1P10580_001	Banana	cytosol, nucleus, plasma membrane	3.83	19.31
Solyc05g053650.2.1	Tomato	endoplasmic reticulum	18.6	13.7
Solyc09g091750.2.1	Tomato	plastid	18.6	13.55
Solyc10g008170.2.1	Tomato	cytosol	0.82	2.97

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.6.2.2.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0034515	GO:GO:0043161	InterPro:IPR011989
UniProt:K4CXZ5	PFAM:PF01851	PANTHER:PTHR10943	PANTHER:PTHR10943:SF8	InterPro:Proteasome/cyclosome_rpt	SUPFAM:SSF48371
EnsemblPlantsGene:Solyc10g008180.1	EnsemblPlants:Solyc10g008180.1.1	UniParc:UPI000276B7A5	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:2305283..2311789

Molecular Weight (calculated)

80598.1 Da

IEP (calculated)

5.398

GRAVY (calculated)

0.127

Length

731 amino acids

Sequence
(BLAST)

001: MYYFQSEQER PLYDLMVPVQ QIVSFYFKHN AEPDAVDLLI EVEDLDLLLE HVDSSNCKRT CSYLTSLAKY LPRFDEIVAL DYACAMYIKF KEYPLALVTA
101: LAMDSMENIK SVFTSCDDNL QKAQFCCILA RHGQTFDLDE KLCASNEDRE VLQEIVNNVI LSEGYLALAR DIEVMEPKTP DDIYKLHLLD GQASAEQSVD
201: SATQNLAATF VNAFVNAGFG QDKLMTVPSE ATSGGSSTSW LFKNKEHRKA SAAASLGMIL LWDVDSGFAQ LDKYLHSTDT HVVAGALLGV GIVNCGIKND
301: LDPALALLSD YIRKDDPSIR IGAIMGLGLS YAGARNEEIS SILIHILEDD KVSLDVIAFT AISLGLVYVG SCHRNIAEEL IYALTDRSEA ELGEPLARLL
401: PLALGLLYLG KQDEVEGIAN LLKTSTLHKK IRKHCLMILH SCAYAGSGDV LKVQHFLGQC GRHLVKGESF QGPAVLGIAM VAMSEELGIE MTIRSLEHLL
501: QYGDQNIRRA VPLALGLLCI SNPKVNVMDT LRRLSRDIDI EVAMAATISL GLIGAGTNNA RIAGMLRYLS NCHRRYSSLL FCVRIAQGLV HLGKGLITLS
601: PYHSERFLLS PTALAGLIIM VHMCLDMRST ILGKYHYLLY FLTLAMQPRM LMTVDEKLKP LSVPVRVGQA VDLLGQAGRP KTITGSQTQL TPVLLGAEER
701: AELATEKYIP LSPILEGFVI LKENPEYRDD N

Best Arabidopsis Sequence Match ( AT2G20580.1 )
(BLAST)

001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E

Arabidopsis Description

RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.