Factsheet for Solyc02g081700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 22908117
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018852	Potato	cytosol	99.19	99.19
KRH76017	Soybean	cytosol	92.34	91.6
KRH65617	Soybean	nucleus	92.34	91.6
KRH00322	Soybean	cytosol	92.34	91.6
KRH49455	Soybean	endoplasmic reticulum, nucleus	91.94	91.2
VIT_10s0042g00070.t01	Wine grape	cytosol	90.73	90.0
Bra023851.1-P	Field mustard	cytosol	89.92	89.2
AT3G22110.1	Thale cress	cytosol, mitochondrion	89.11	88.4
Bra031328.1-P	Field mustard	cytosol, mitochondrion	89.11	88.4
CDY39501	Canola	cytosol, mitochondrion	70.97	87.56
CDY66240	Canola	extracellular	71.37	87.19
CDY19309	Canola	extracellular	70.56	87.06
GSMUA_Achr7P21280_001	Banana	cytosol	80.24	86.9
CDY37382	Canola	cytosol	69.76	86.07
CDY69258	Canola	cytosol, mitochondrion	72.18	86.06
Zm00001d036319_P001	Maize	cytosol	85.48	84.8
Zm00001d045194_P001	Maize	extracellular	85.48	84.8
OQU75904	Sorghum	cytosol	85.08	84.4
AT4G15165.1	Thale cress	cytosol	70.16	83.65
TraesCS7D01G129900.1	Wheat	cytosol	83.87	83.2
TraesCS7B01G030800.1	Wheat	plastid	83.87	83.2
TraesCS7A01G130500.1	Wheat	plastid	83.87	83.2
GSMUA_Achr6P02000_001	Banana	cytosol	64.92	82.99
Os06t0176000-01	Rice	cytosol	83.06	82.4
Os06t0177100-01	Rice	plastid	83.06	82.4
Os06t0167600-01	Rice	cytosol	83.06	82.4
GSMUA_Achr4P00300_001	Banana	cytosol	88.31	82.02
HORVU7Hr1G027220.2	Barley	cytosol	80.24	75.09
Bra037085.1-P	Field mustard	cytosol	88.31	71.1
Solyc08g016510.2.1	Tomato	extracellular	39.11	40.93
Solyc02g070510.2.1	Tomato	nucleus	39.11	40.93
Solyc01g111450.2.1	Tomato	plastid	34.68	34.54
Solyc10g008010.2.1	Tomato	extracellular, plastid	32.26	34.04
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	32.26	34.04
Solyc01g111460.2.1	Tomato	cytosol	17.34	33.59
Solyc12g009140.1.1	Tomato	extracellular	31.45	31.71
Solyc04g080590.2.1	Tomato	extracellular	34.68	29.05
Solyc10g081130.1.1	Tomato	extracellular, plastid	29.03	28.92
Solyc10g077030.1.1	Tomato	extracellular	28.23	28.11

Protein Annotations

MapMan:19.2.6.1.1.3	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
InterPro:IPR023332	InterPro:IPR029055	UniProt:K4BA40	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF13	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha4	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc02g081700.1	EnsemblPlants:Solyc02g081700.1.1
MEROPS:T01.973	UniParc:UPI0002767967	SEG:seg	:	:	:

Description

Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:K4BA40]

Coordinates

chr2:+:45557118..45557864

Molecular Weight (calculated)

27216.4 Da

IEP (calculated)

5.409

GRAVY (calculated)

-0.252

Length

248 amino acids

Sequence
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLVGEKK VTSKLLQTST SSEKMYKIDD HVACAVAGIM SDANILINTA RFQAQRYTFA
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KNYGFQLYMS DPSGNYGGWK AAAIGANNQA AQSILKQDYK DDITREEAVQ LALKVLGKTM
201: DSTSLTSEKL ELAEVFLSNG KVKYQACSPE TLNKMLVSAG LTQPTVEE

Best Arabidopsis Sequence Match ( AT3G22110.1 )
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLIGEKK VTSKLLQTST SAEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYTFM
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS

Arabidopsis Description

PAC1Proteasome subunit alpha type-4-A [Source:UniProtKB/Swiss-Prot;Acc:O81148]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.