CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00322	Soybean	cytosol	98.8	98.8
KRH65617	Soybean	nucleus	96.8	96.8
KRH76017	Soybean	cytosol	96.8	96.8
VIT_10s0042g00070.t01	Wine grape	cytosol	94.0	94.0
PGSC0003DMT400018852	Potato	cytosol	91.6	92.34
Solyc02g081700.1.1	Tomato	extracellular	91.2	91.94
Bra023851.1-P	Field mustard	cytosol	90.4	90.4
CDY39501	Canola	cytosol, mitochondrion	72.4	90.05
AT3G22110.1	Thale cress	cytosol, mitochondrion	90.0	90.0
CDY66240	Canola	extracellular	72.8	89.66
Bra031328.1-P	Field mustard	cytosol, mitochondrion	89.6	89.6
CDY19309	Canola	extracellular	72.0	89.55
CDY69258	Canola	cytosol, mitochondrion	74.4	89.42
GSMUA_Achr7P21280_001	Banana	cytosol	81.2	88.65
CDY37382	Canola	cytosol	70.8	88.06
AT4G15165.1	Thale cress	cytosol	72.4	87.02
GSMUA_Achr6P02000_001	Banana	cytosol	67.2	86.6
OQU75904	Sorghum	cytosol	85.2	85.2
Zm00001d045194_P001	Maize	extracellular	84.8	84.8
Zm00001d036319_P001	Maize	cytosol	84.4	84.4
TraesCS7A01G130500.1	Wheat	plastid	83.6	83.6
TraesCS7D01G129900.1	Wheat	cytosol	83.6	83.6
TraesCS7B01G030800.1	Wheat	plastid	83.6	83.6
GSMUA_Achr4P00300_001	Banana	cytosol	88.8	83.15
Os06t0167600-01	Rice	cytosol	82.8	82.8
Os06t0176000-01	Rice	cytosol	82.8	82.8
Os06t0177100-01	Rice	plastid	82.8	82.8
HORVU7Hr1G027220.2	Barley	cytosol	79.6	75.09
Bra037085.1-P	Field mustard	cytosol	89.2	72.4
KRH36037	Soybean	endoplasmic reticulum, nucleus	38.4	40.51
KRG90710	Soybean	peroxisome	38.4	40.51
KRH69234	Soybean	endoplasmic reticulum	38.4	40.51
KRH31817	Soybean	cytosol	38.0	40.08
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	34.0	36.17
KRH13728	Soybean	cytosol	34.0	36.17
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	33.6	35.74
KRH65961	Soybean	cytosol	33.2	35.32
KRH69759	Soybean	endoplasmic reticulum, nucleus	34.8	34.94
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	34.8	34.94
KRH26034	Soybean	nucleus	33.2	33.74
KRH55422	Soybean	cytosol, endoplasmic reticulum	32.8	33.33
KRH05846	Soybean	cytosol, nucleus	35.2	30.99
KRG94269	Soybean	cytosol	30.8	30.92
KRH38836	Soybean	cytosol, nucleus	34.8	30.53
KRH15173	Soybean	cytosol, nucleus	34.8	30.21
KRH57704	Soybean	cytosol, endoplasmic reticulum	30.0	28.74
KRH57899	Soybean	cytosol	16.0	26.14
KRH20407	Soybean	cytosol	14.4	23.53

Protein Annotations

EntrezGene:100793282	MapMan:19.2.6.1.1.3	Gene3D:3.60.20.10	EMBL:ACUP02004364	EnsemblPlantsGene:GLYMA_07G155700	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	UniProt:I1KKK0	InterPro:IPR023332	InterPro:IPR029055
EnsemblPlants:KRH49455	ProteinID:KRH49455	ProteinID:KRH49455.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF13	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha4	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0002339073	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:19157855..19158607

Molecular Weight (calculated)

27334.6 Da

IEP (calculated)

7.178

GRAVY (calculated)

-0.212

Length

250 amino acids

Sequence
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGTAIGILSK DGVVLVGEKK VTSKLLQTST STEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYAYA
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KNFGFQLYTS DPSGNYGGWK AAAIGANNQA AQSILKQDYK DDITREEAVQ LALKVLSKTM
201: DSTSLTSEKL ELAEVFLSPA GKVKYQVCSP ENLTKLLVKF GVTQPATDTA

Best Arabidopsis Sequence Match ( AT3G14290.1 )
(BLAST)

001: MFLTRTEYDR GVNTFSPEGR LFQVEYAIEA IKLGSTAIGV KTKEGVVLAV EKRITSPLLE PSSVEKIMEI DDHIGCAMSG LIADARTLVE HARVETQNHR
101: FSYGEPMTVE STTQALCDLA LRFGEGEEES MSRPFGVSLL IAGHDENGPS LYYTDPSGTF WQCNAKAIGS GSEGADSSLQ EQFNKDITLQ EAETIAVSIL
201: KQVMEEKVTP NNVDIAKVAP AYHLYTPQEV EAVISRL

Arabidopsis Description

PAE2Proteasome subunit alpha type-5-B [Source:UniProtKB/Swiss-Prot;Acc:Q42134]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.