CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38836	Soybean	cytosol, nucleus	98.59	98.25
KRH15173	Soybean	cytosol, nucleus	98.59	97.22
KRH20407	Soybean	cytosol	46.48	86.27
PGSC0003DMT400009588	Potato	cytosol	79.58	82.48
VIT_18s0001g12760.t01	Wine grape	cytosol	82.04	82.04
PGSC0003DMT400039976	Potato	cytosol	77.82	80.95
CDX95156	Canola	cytosol	78.87	80.87
CDY21248	Canola	cytosol	39.79	80.71
CDX71518	Canola	cytosol	76.76	80.44
Bra014068.1-P	Field mustard	cytosol	76.41	80.37
CDY52371	Canola	cytosol	77.82	80.36
Bra027456.1-P	Field mustard	cytosol	77.46	80.0
CDY47593	Canola	cytosol	76.76	79.85
CDY17035	Canola	cytosol	76.76	79.85
CDY02422	Canola	cytosol	76.06	79.7
Bra035332.1-P	Field mustard	cytosol	76.06	79.7
AT5G42790.1	Thale cress	cytosol	76.41	78.06
AT1G47250.1	Thale cress	cytosol	75.7	77.62
Solyc04g080590.2.1	Tomato	extracellular	79.93	76.69
GSMUA_Achr10P...	Banana	cytosol	69.37	74.34
Os02t0133800-01	Rice	plastid	66.2	69.63
EES04466	Sorghum	cytosol	64.08	67.41
Zm00001d015180_P001	Maize	extracellular, mitochondrion, plasma membrane	64.79	67.15
TraesCS6A01G097800.1	Wheat	unclear	67.25	66.32
TraesCS6B01G126000.1	Wheat	cytosol	67.25	66.09
HORVU6Hr1G017500.1	Barley	cytosol	66.9	65.97
TraesCS6D01G084800.1	Wheat	golgi	66.9	65.97
KRH69234	Soybean	endoplasmic reticulum	31.69	37.97
KRH31817	Soybean	cytosol	31.34	37.55
KRH36037	Soybean	endoplasmic reticulum, nucleus	30.99	37.13
KRG90710	Soybean	peroxisome	30.99	37.13
KRH49455	Soybean	endoplasmic reticulum, nucleus	30.99	35.2
KRH00322	Soybean	cytosol	30.63	34.8
KRH65961	Soybean	cytosol	28.52	34.47
KRH13728	Soybean	cytosol	28.52	34.47
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	28.52	34.47
KRH65617	Soybean	nucleus	30.28	34.4
KRH76017	Soybean	cytosol	30.28	34.4
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	28.17	34.04
KRH69759	Soybean	endoplasmic reticulum, nucleus	29.23	33.33
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	28.17	32.13
KRH26034	Soybean	nucleus	27.82	32.11
KRG94269	Soybean	cytosol	27.82	31.73
KRH55422	Soybean	cytosol, endoplasmic reticulum	27.46	31.71
KRH57704	Soybean	cytosol, endoplasmic reticulum	26.76	29.12
KRH57899	Soybean	cytosol	12.32	22.88

Protein Annotations

EntrezGene:100797380	MapMan:19.2.6.1.1.6	Gene3D:3.60.20.10	EMBL:ACUP02010781	EnsemblPlantsGene:GLYMA_17G252100	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	UniProt:I1MXX5	InterPro:IPR023332	InterPro:IPR029055
EnsemblPlants:KRH05846	ProteinID:KRH05846	ProteinID:KRH05846.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF12	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha1
InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	MEROPS:T01.976	UniParc:UPI000233E962
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:40648707..40650886

Molecular Weight (calculated)

30977.4 Da

IEP (calculated)

4.828

GRAVY (calculated)

-0.277

Length

284 amino acids

Sequence
(BLAST)

001: MFRNQYDTDV TTWSPAGRLF QVEYAMEAVK QGSAAIGLRS KTHVVLACVN KANSELSSHQ KKIFKVDNHI GVAIAGLTAD GRVLSRYMRS ECINYNYTYE
101: SPLPVGRLVV QLADKAQVCT QRSWKRPYGV GLLVAGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFENFV GSSREDLIKD ALIATRESLQ
201: GEKLRSSVCT IAVVGVGEPF HILDPETVQQ LIDTFEIVRE EEAAPAEEEA QPAAEQDAPT DQGAAAADQG AAAAVDQGGS PMDI

Best Arabidopsis Sequence Match ( AT5G42790.1 )
(BLAST)

001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM

Arabidopsis Description

PAF1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178UFX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.