Factsheet for Os02t0133800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 19217306
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19217306 doi

X Chen, Y Wang, J Li, A Jiang, Y Cheng, W Zhang

Department of Biochemistry and Molecular Biology, Nanjing Agricultural University, Weigang, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04466	Sorghum	cytosol	89.26	89.26
Zm00001d015180_P001	Maize	extracellular, mitochondrion, plasma membrane	90.0	88.69
TraesCS6B01G126000.1	Wheat	cytosol	91.85	85.81
TraesCS6A01G097800.1	Wheat	unclear	91.48	85.76
TraesCS6D01G084800.1	Wheat	golgi	91.48	85.76
HORVU6Hr1G017500.1	Barley	cytosol	91.48	85.76
GSMUA_Achr10P...	Banana	cytosol	75.56	76.98
Bra014068.1-P	Field mustard	cytosol	70.37	70.37
PGSC0003DMT400039976	Potato	cytosol	70.37	69.6
CDY17035	Canola	cytosol	70.37	69.6
PGSC0003DMT400009588	Potato	cytosol	70.37	69.34
CDY47593	Canola	cytosol	70.0	69.23
CDX71518	Canola	cytosol	68.89	68.63
CDY21248	Canola	cytosol	35.56	68.57
CDY52371	Canola	cytosol	69.63	68.36
Bra027456.1-P	Field mustard	cytosol	69.63	68.36
CDY02422	Canola	cytosol	68.52	68.27
Bra035332.1-P	Field mustard	cytosol	68.52	68.27
AT5G42790.1	Thale cress	cytosol	70.0	67.99
VIT_18s0001g12760.t01	Wine grape	cytosol	71.48	67.96
CDX95156	Canola	cytosol	69.63	67.87
AT1G47250.1	Thale cress	cytosol	69.26	67.51
KRH05846	Soybean	cytosol, nucleus	69.63	66.2
KRH38836	Soybean	cytosol, nucleus	69.63	65.96
KRH15173	Soybean	cytosol, nucleus	69.63	65.28
Solyc04g080590.2.1	Tomato	extracellular	70.74	64.53
KRH20407	Soybean	cytosol	33.33	58.82
Os11t0615700-01	Rice	peroxisome	30.74	35.02
Os05t0490800-01	Rice	cytosol, plasma membrane	30.74	33.33
Os03t0387100-01	Rice	cytosol, plasma membrane	28.52	32.77
Os03t0180400-01	Rice	cytosol	29.63	32.52
Os02t0634900-01	Rice	cytosol, plasma membrane	28.15	32.34
Os08t0548900-01	Rice	plastid	29.63	32.13
Os01t0811100-01	Rice	cytosol	29.26	31.73
Os09t0538200-01	Rice	cytosol, plastid	28.89	31.33
Os06t0177100-01	Rice	plastid	27.41	29.6
Os06t0176000-01	Rice	cytosol	27.41	29.6
Os06t0167600-01	Rice	cytosol	27.41	29.6
Os07t0614100-01	Rice	cytosol	22.59	24.11

Protein Annotations

MapMan:19.2.6.1.1.6	Gene3D:3.60.20.10	EntrezGene:4328215	EMBL:AK103646	EMBL:AK109376	ProteinID:BAD08003.1
ProteinID:BAD10085.1	ProteinID:BAF07722.1	ProteinID:BAS76843.1	EMBL:D37886	ProteinID:EEE56253.1	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
EnsemblPlantsGene:Os02g0133800	EnsemblPlants:Os02t0133800-01	UniProt:P52428	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF12	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha1	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI000013243D	RefSeq:XP_015626959.1	SEG:seg

Description

C2 subunit of the 20S proteasome, 20S proteasome C2 subunit, 20S proteasome alpha6 subunitProteasome subunit alpha type 1 (EC 3.4.25.1) (20S proteasome alpha subunit F) (20S proteasome subunit alpha-6) (Proteasome component C2). (Os02t0133800-01);Non-protein coding transcript. (Os02t0133800-02)

Coordinates

chr2:+:1784613..1788028

Molecular Weight (calculated)

29631.9 Da

IEP (calculated)

5.217

GRAVY (calculated)

-0.307

Length

270 amino acids

Sequence
(BLAST)

001: MFRNQYDTDV TTWSPAGRLF QVEYAMEAVK QGSACVGLRS RTHAVLAAAN KAASELSSHQ RKVFRVADHA GVALAGLTAD GRVLSRFLRS ECINHAFVYD
101: APLPVSRLAL RLADKAQVCT QRSWKRPYGV GLLVAGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT FLERRFEGYN DYTPEQLIKD ALSAIKETLQ
201: GEKLTSSNCT VAIVGRKDDG TVEPFEMIDV KRIQEIIDSM EAAEEAPAAE AESSSMQEED KGTDAAPMDI

Best Arabidopsis Sequence Match ( AT5G42790.1 )
(BLAST)

001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM

Arabidopsis Description

PAF1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178UFX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.