CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027456.1-P	Field mustard	cytosol	99.64	99.64
CDX95156	Canola	cytosol	98.18	97.47
CDY02422	Canola	cytosol	94.55	95.94
CDX71518	Canola	cytosol	94.18	95.57
AT5G42790.1	Thale cress	cytosol	95.27	94.24
CDY17035	Canola	cytosol	93.09	93.77
CDY47593	Canola	cytosol	93.09	93.77
CDY21248	Canola	cytosol	45.45	89.29
VIT_18s0001g12760.t01	Wine grape	cytosol	81.45	78.87
KRH38836	Soybean	cytosol, nucleus	81.09	78.25
KRH05846	Soybean	cytosol, nucleus	80.36	77.82
KRH15173	Soybean	cytosol, nucleus	81.09	77.43
PGSC0003DMT400009588	Potato	cytosol	77.09	77.37
PGSC0003DMT400039976	Potato	cytosol	76.73	77.29
GSMUA_Achr10P...	Banana	cytosol	72.0	74.72
Solyc04g080590.2.1	Tomato	extracellular	77.82	72.3
Os02t0133800-01	Rice	plastid	68.36	69.63
KRH20407	Soybean	cytosol	38.18	68.63
EES04466	Sorghum	cytosol	66.55	67.78
Zm00001d015180_P001	Maize	extracellular, mitochondrion, plasma membrane	67.27	67.52
TraesCS6A01G097800.1	Wheat	unclear	67.64	64.58
TraesCS6B01G126000.1	Wheat	cytosol	67.64	64.36
HORVU6Hr1G017500.1	Barley	cytosol	67.27	64.24
TraesCS6D01G084800.1	Wheat	golgi	66.91	63.89
CDY22253	Canola	cytosol	30.91	36.17
CDY26894	Canola	cytosol	30.91	36.17
CDX68003	Canola	cytosol, extracellular	30.91	36.17
CDX79306	Canola	cytosol	30.91	36.17
CDY08208	Canola	peroxisome	30.91	34.84
CDY51800	Canola	peroxisome	30.91	34.0
CDY29009	Canola	cytosol	30.55	33.6
CDX73737	Canola	cytosol, extracellular	30.55	33.6
CDX77988	Canola	cytosol, extracellular	30.55	33.6
CDX90655	Canola	cytosol	30.55	33.6
CDY66240	Canola	extracellular	24.0	32.51
CDY37382	Canola	cytosol	23.27	31.84
CDY33398	Canola	cytosol, extracellular	28.36	31.71
CDY18045	Canola	cytosol	28.36	31.71
CDY02493	Canola	mitochondrion	32.0	31.43
CDY69258	Canola	cytosol, mitochondrion	23.64	31.25
CDY50408	Canola	cytosol, extracellular	27.64	31.15
CDY25683	Canola	cytosol, plastid	32.0	31.1
CDY39501	Canola	cytosol, mitochondrion	22.55	30.85
CDY19309	Canola	extracellular	22.55	30.85
CDX93103	Canola	cytosol	28.36	29.66
CDX77059	Canola	cytosol	26.55	29.32
CDY48190	Canola	cytosol	26.55	29.32
CDY04473	Canola	cytosol	26.55	29.32
CDX71476	Canola	cytosol	26.55	29.32
CDX88517	Canola	cytosol	30.91	27.69
CDX87400	Canola	extracellular	30.91	26.56
CDX81411	Canola	mitochondrion, plastid	25.45	24.73

Protein Annotations

MapMan:19.2.6.1.1.6	Gene3D:3.60.20.10	GO:A0A078IR54	UniProt:A0A078IR54	EnsemblPlants:CDY52371	ProteinID:CDY52371
ProteinID:CDY52371.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00006807001
InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF12	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha1	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0004EE7071	SEG:seg	:

Description

BnaA09g15700DProteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A078IR54]

Coordinates

chrLK033081:-:16163..18246

Molecular Weight (calculated)

29968.1 Da

IEP (calculated)

4.849

GRAVY (calculated)

-0.308

Length

275 amino acids

Sequence
(BLAST)

001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ KKIFKVDDHI GVAIAGLTAD GRVLSRYMRS EAINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VSVLGVGEPF HFLDQETIQK VIDTFEKVAE DEEGEAGEGD AEAAAAPAEQ GGGGAGDQDV APMEM

Best Arabidopsis Sequence Match ( AT5G42790.1 )
(BLAST)

001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM

Arabidopsis Description

PAF1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178UFX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.