CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68003	Canola	cytosol, extracellular	99.57	99.57
Bra035099.1-P	Field mustard	cytosol	99.15	99.15
CDY26894	Canola	cytosol	98.72	98.72
CDY22253	Canola	cytosol	98.72	98.72
AT1G79210.1	Thale cress	cytosol	97.87	97.87
Bra003618.1-P	Field mustard	cytosol	99.57	95.51
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	94.04	94.04
KRH13728	Soybean	cytosol	93.62	93.62
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	93.62	93.62
Solyc10g008010.2.1	Tomato	extracellular, plastid	93.62	93.62
KRH65961	Soybean	cytosol	93.19	93.19
VIT_01s0011g01960.t01	Wine grape	cytosol	93.19	93.19
PGSC0003DMT400027339	Potato	cytosol	93.19	93.19
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	92.77	92.77
PGSC0003DMT400052657	Potato	cytosol	92.77	92.77
GSMUA_Achr5P19360_001	Banana	cytosol	92.34	92.34
TraesCS2A01G189400.1	Wheat	cytosol	91.06	91.06
EER94765	Sorghum	cytosol	91.06	91.06
EES05472	Sorghum	cytosol	91.06	91.06
HORVU3Hr1G068660.1	Barley	cytosol	91.06	91.06
TraesCS3A01G285600.1	Wheat	cytosol	91.06	91.06
TraesCS2D01G198400.1	Wheat	cytosol	91.06	91.06
TraesCS2B01G217800.1	Wheat	cytosol	91.06	91.06
Os02t0634900-01	Rice	cytosol, plasma membrane	90.64	90.64
TraesCS3D01G285400.1	Wheat	cytosol	90.64	90.64
GSMUA_Achr8P13980_001	Banana	cytosol	90.64	90.64
Os03t0387100-01	Rice	cytosol, plasma membrane	90.21	90.21
Zm00001d017336_P007	Maize	cytosol	91.06	89.17
Zm00001d017338_P006	Maize	cytosol	91.06	89.17
TraesCS3B01G319500.1	Wheat	cytosol	91.06	88.43
HORVU2Hr1G036390.6	Barley	plastid	87.23	75.93
CDX88517	Canola	cytosol	98.3	75.24
CDX87400	Canola	extracellular	98.72	72.5
Zm00001d017340_P002	Maize	cytosol	55.32	68.42
HORVU3Hr1G068630.1	Barley	mitochondrion	38.72	59.87
Zm00001d051211_P008	Maize	cytosol	90.64	45.32
CDX73737	Canola	cytosol, extracellular	37.87	35.6
CDX77988	Canola	cytosol, extracellular	37.87	35.6
CDX90655	Canola	cytosol	37.87	35.6
CDY29009	Canola	cytosol	37.87	35.6
CDY21248	Canola	cytosol	20.0	33.57
CDY33398	Canola	cytosol, extracellular	34.47	32.93
CDY18045	Canola	cytosol	34.47	32.93
CDY50408	Canola	cytosol, extracellular	34.04	32.79
CDY08208	Canola	peroxisome	33.19	31.97
CDX71518	Canola	cytosol	36.17	31.37
CDY37382	Canola	cytosol	26.81	31.34
CDY51800	Canola	peroxisome	33.19	31.2
CDX93103	Canola	cytosol	34.89	31.18
CDY66240	Canola	extracellular	26.81	31.03
CDY02422	Canola	cytosol	35.74	31.0
CDY52371	Canola	cytosol	36.17	30.91
CDX95156	Canola	cytosol	36.17	30.69
CDY17035	Canola	cytosol	35.32	30.4
CDY47593	Canola	cytosol	35.32	30.4
CDY04473	Canola	cytosol	31.91	30.12
CDY48190	Canola	cytosol	31.91	30.12
CDX77059	Canola	cytosol	31.91	30.12
CDX71476	Canola	cytosol	31.91	30.12
CDY02493	Canola	mitochondrion	33.62	28.21
CDY25683	Canola	cytosol, plastid	33.62	27.92
CDY69258	Canola	cytosol, mitochondrion	24.68	27.88
CDX81411	Canola	mitochondrion, plastid	31.91	26.5
CDY39501	Canola	cytosol, mitochondrion	22.55	26.37
CDY19309	Canola	extracellular	22.13	25.87

Protein Annotations

MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	GO:A0A078CQ28	EnsemblPlants:CDX79306	ProteinID:CDX79306	ProteinID:CDX79306.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005839	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00131975001
InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF16	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b
InterPro:Proteasome_subunit_alpha2	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0004EAD4AB	:	:

Description

BnaC06g19970D

Coordinates

chrLK031817:-:1232376..1234696

Molecular Weight (calculated)

25775.7 Da

IEP (calculated)

5.152

GRAVY (calculated)

-0.249

Length

235 amino acids

Sequence
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEE SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYNRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKIFR VLTPAEIDDY LAEVE

Best Arabidopsis Sequence Match ( AT1G16470.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.