Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017338_P006 | Maize | cytosol | 100.0 | 97.92 |
| Zm00001d017336_P007 | Maize | cytosol | 100.0 | 97.92 |
| HORVU3Hr1G068660.1 | Barley | cytosol | 97.87 | 97.87 |
| TraesCS2A01G189400.1 | Wheat | cytosol | 97.87 | 97.87 |
| TraesCS2B01G217800.1 | Wheat | cytosol | 97.87 | 97.87 |
| TraesCS2D01G198400.1 | Wheat | cytosol | 97.87 | 97.87 |
| TraesCS3A01G285600.1 | Wheat | cytosol | 97.87 | 97.87 |
| Os02t0634900-01 | Rice | cytosol, plasma membrane | 97.45 | 97.45 |
| EER94765 | Sorghum | cytosol | 97.45 | 97.45 |
| TraesCS3D01G285400.1 | Wheat | cytosol | 97.45 | 97.45 |
| TraesCS3B01G319500.1 | Wheat | cytosol | 97.87 | 95.04 |
| GSMUA_Achr5P19360_001 | Banana | cytosol | 91.91 | 91.91 |
| VIT_01s0011g01960.t01 | Wine grape | cytosol | 91.49 | 91.49 |
| CDY22253 | Canola | cytosol | 91.06 | 91.06 |
| KRH75739 | Soybean | cytosol, endoplasmic reticulum, nucleus | 91.06 | 91.06 |
| KRH43728 | Soybean | cytosol, endoplasmic reticulum, nucleus | 91.06 | 91.06 |
| AT1G16470.2 | Thale cress | cytosol | 91.06 | 91.06 |
| PGSC0003DMT400027339 | Potato | cytosol | 91.06 | 91.06 |
| GSMUA_Achr8P13980_001 | Banana | cytosol | 91.06 | 91.06 |
| Solyc10g008010.2.1 | Tomato | extracellular, plastid | 91.06 | 91.06 |
| Bra008402.1-P | Field mustard | cytosol | 91.06 | 91.06 |
| Bra035099.1-P | Field mustard | cytosol | 91.06 | 91.06 |
| CDX68003 | Canola | cytosol, extracellular | 91.06 | 91.06 |
| CDX79306 | Canola | cytosol | 91.06 | 91.06 |
| CDY26894 | Canola | cytosol | 91.06 | 91.06 |
| KRH13728 | Soybean | cytosol | 90.64 | 90.64 |
| KRH65961 | Soybean | cytosol | 90.64 | 90.64 |
| AT1G79210.1 | Thale cress | cytosol | 90.21 | 90.21 |
| PGSC0003DMT400052657 | Potato | cytosol | 89.36 | 89.36 |
| Solyc07g055080.2.1 | Tomato | cytosol, endoplasmic reticulum | 88.94 | 88.94 |
| Bra003618.1-P | Field mustard | cytosol | 91.06 | 87.35 |
| HORVU2Hr1G036390.6 | Barley | plastid | 94.04 | 81.85 |
| Zm00001d017340_P002 | Maize | cytosol | 61.28 | 75.79 |
| CDX88517 | Canola | cytosol | 91.06 | 69.71 |
| CDX87400 | Canola | extracellular | 91.06 | 66.88 |
| Zm00001d051211_P008 | Maize | cytosol | 99.57 | 49.79 |
| EES15231 | Sorghum | cytosol | 37.87 | 35.74 |
| EER97100 | Sorghum | cytosol | 37.45 | 35.34 |
| OQU93221 | Sorghum | cytosol | 34.47 | 34.18 |
| EES10115 | Sorghum | peroxisome | 34.47 | 34.18 |
| OQU75904 | Sorghum | cytosol | 35.74 | 33.6 |
| EES01630 | Sorghum | cytosol | 28.51 | 32.84 |
| EER92751 | Sorghum | cytosol | 33.19 | 31.71 |
| EER97635 | Sorghum | cytosol | 31.91 | 30.12 |
| EES04466 | Sorghum | cytosol | 33.19 | 28.89 |
| KXG36677 | Sorghum | plastid | 31.06 | 26.64 |
Protein Annotations
| MapMan:19.2.6.1.1.2 | Gene3D:3.60.20.10 | EntrezGene:8074791 | UniProt:C5XY69 | EnsemblPlants:EES05472 | ProteinID:EES05472 |
| ProteinID:EES05472.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 |
| GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 | GO:GO:0051603 | InterPro:IPR023332 |
| InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 | PFscan:PS51475 |
| PANTHER:PTHR11599 | PANTHER:PTHR11599:SF16 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | InterPro:Proteasome_subunit_alpha2 |
| SMART:SM00948 | EnsemblPlantsGene:SORBI_3004G224900 | SUPFAM:SSF56235 | unigene:Sbi.12068 | UniParc:UPI00017B6E25 | RefSeq:XP_002452496.1 |
Description
hypothetical protein
Coordinates
chr4:+:57528770..57533185
Molecular Weight (calculated)
25865.8 Da
IEP (calculated)
5.381
GRAVY (calculated)
-0.227
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA ANGVVIATEK KLPSILVDET SVQKIQALTP NIGVVYSGMG PDFRVLVRKS RKQAQQYYRL
101: YKEHIPVTQL VRETAAVMQE FTQSGGVRPF GVSLLIAGYD DNGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGYE
201: GQISSNNIEI GIIRADREFK VLSPAEIKDF LEEVE
101: YKEHIPVTQL VRETAAVMQE FTQSGGVRPF GVSLLIAGYD DNGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGYE
201: GQISSNNIEI GIIRADREFK VLSPAEIKDF LEEVE
001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE
Arabidopsis Description
PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.