CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26894	Canola	cytosol	76.22	99.57
CDY22253	Canola	cytosol	76.22	99.57
CDX68003	Canola	cytosol, extracellular	75.57	98.72
CDX79306	Canola	cytosol	75.24	98.3
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	72.31	94.47
Solyc10g008010.2.1	Tomato	extracellular, plastid	71.99	94.04
KRH13728	Soybean	cytosol	71.99	94.04
PGSC0003DMT400027339	Potato	cytosol	71.66	93.62
PGSC0003DMT400052657	Potato	cytosol	71.66	93.62
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	71.66	93.62
VIT_01s0011g01960.t01	Wine grape	cytosol	71.66	93.62
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	71.66	93.62
KRH65961	Soybean	cytosol	71.34	93.19
GSMUA_Achr5P19360_001	Banana	cytosol	70.68	92.34
TraesCS2B01G217800.1	Wheat	cytosol	69.71	91.06
EES05472	Sorghum	cytosol	69.71	91.06
EER94765	Sorghum	cytosol	69.71	91.06
TraesCS2A01G189400.1	Wheat	cytosol	69.71	91.06
TraesCS2D01G198400.1	Wheat	cytosol	69.71	91.06
HORVU3Hr1G068660.1	Barley	cytosol	69.71	91.06
TraesCS3A01G285600.1	Wheat	cytosol	69.71	91.06
TraesCS3D01G285400.1	Wheat	cytosol	69.38	90.64
GSMUA_Achr8P13980_001	Banana	cytosol	69.38	90.64
Os02t0634900-01	Rice	cytosol, plasma membrane	69.38	90.64
CDX87400	Canola	extracellular	94.46	90.62
Os03t0387100-01	Rice	cytosol, plasma membrane	69.06	90.21
Zm00001d017338_P006	Maize	cytosol	69.71	89.17
Zm00001d017336_P007	Maize	cytosol	69.71	89.17
TraesCS3B01G319500.1	Wheat	cytosol	69.71	88.43
HORVU2Hr1G036390.6	Barley	plastid	67.1	76.3
Zm00001d017340_P002	Maize	cytosol	42.35	68.42
HORVU3Hr1G068630.1	Barley	mitochondrion	29.64	59.87
Zm00001d051211_P008	Maize	cytosol	69.38	45.32
CDY29009	Canola	cytosol	28.99	35.6
CDX90655	Canola	cytosol	28.99	35.6
CDX77988	Canola	cytosol, extracellular	28.99	35.6
CDX73737	Canola	cytosol, extracellular	28.99	35.6
CDY21248	Canola	cytosol	15.31	33.57
CDY33398	Canola	cytosol, extracellular	26.06	32.52
CDY18045	Canola	cytosol	26.06	32.52
CDY50408	Canola	cytosol, extracellular	25.73	32.38
CDY08208	Canola	peroxisome	25.73	32.38
CDY51800	Canola	peroxisome	25.73	31.6
CDX71518	Canola	cytosol	27.69	31.37
CDY37382	Canola	cytosol	20.52	31.34
CDY66240	Canola	extracellular	20.52	31.03
CDY02422	Canola	cytosol	27.36	31.0
CDY52371	Canola	cytosol	27.69	30.91
CDX93103	Canola	cytosol	26.38	30.8
CDX95156	Canola	cytosol	27.69	30.69
CDY47593	Canola	cytosol	27.04	30.4
CDY17035	Canola	cytosol	27.04	30.4
CDY48190	Canola	cytosol	24.43	30.12
CDY04473	Canola	cytosol	24.43	30.12
CDX77059	Canola	cytosol	24.43	30.12
CDX71476	Canola	cytosol	24.43	30.12
CDY25683	Canola	cytosol, plastid	27.36	29.68
CDY02493	Canola	mitochondrion	26.38	28.93
CDY69258	Canola	cytosol, mitochondrion	18.89	27.88
CDX81411	Canola	mitochondrion, plastid	24.43	26.5
CDY39501	Canola	cytosol, mitochondrion	17.26	26.37
CDY19309	Canola	extracellular	16.94	25.87

Protein Annotations

MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	GO:A0A078DHW1	EnsemblPlants:CDX88517	ProteinID:CDX88517	ProteinID:CDX88517.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005839	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00148072001
InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF16	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b
InterPro:Proteasome_subunit_alpha2	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0004EEE561	:	:

Description

BnaC06g39610D

Coordinates

chrLK031855:-:1440183..1442853

Molecular Weight (calculated)

33811.6 Da

IEP (calculated)

6.779

GRAVY (calculated)

-0.152

Length

307 amino acids

Sequence
(BLAST)

001: MESDHVMMMR TTASFRTRSC DDCVCVRASL RRELLCANSF YKKSKATSFV SLPSSLLDPY IGGFFEVSLK VQMGDSQYSF SLTTFSPSGK LVQIEHALTA
101: VGSGQTSLGI KASNGVVIAT EKKLPSILVD EASVQKIQNL TPNIGVVYSG MGPDFRVLVR KSRKQAEQYL RLYKEPIPVT QLVRETATVM QEFTQSGGVR
201: PFGVSLLVAG YDDKGPQLYQ VDPSGSYFSW KASAMGKNVS NAKTFLEKRY TEDMELDDAI HTAILTLKEG FEGEISSKNI EIGKIGADKV FRVLTPAEID
301: DYLAEVE

Best Arabidopsis Sequence Match ( AT1G16470.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.