CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68003	Canola	cytosol, extracellular	72.81	99.15
CDY26894	Canola	cytosol	72.81	99.15
CDY22253	Canola	cytosol	72.81	99.15
CDX79306	Canola	cytosol	72.5	98.72
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	69.38	94.47
CDX88517	Canola	cytosol	90.62	94.46
Solyc10g008010.2.1	Tomato	extracellular, plastid	69.06	94.04
KRH13728	Soybean	cytosol	69.06	94.04
PGSC0003DMT400027339	Potato	cytosol	68.75	93.62
PGSC0003DMT400052657	Potato	cytosol	68.75	93.62
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	68.75	93.62
VIT_01s0011g01960.t01	Wine grape	cytosol	68.75	93.62
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	68.75	93.62
KRH65961	Soybean	cytosol	68.44	93.19
GSMUA_Achr5P19360_001	Banana	cytosol	67.81	92.34
TraesCS3A01G285600.1	Wheat	cytosol	66.88	91.06
HORVU3Hr1G068660.1	Barley	cytosol	66.88	91.06
TraesCS2D01G198400.1	Wheat	cytosol	66.88	91.06
EER94765	Sorghum	cytosol	66.88	91.06
EES05472	Sorghum	cytosol	66.88	91.06
TraesCS2B01G217800.1	Wheat	cytosol	66.88	91.06
TraesCS2A01G189400.1	Wheat	cytosol	66.88	91.06
TraesCS3D01G285400.1	Wheat	cytosol	66.56	90.64
Os02t0634900-01	Rice	cytosol, plasma membrane	66.56	90.64
GSMUA_Achr8P13980_001	Banana	cytosol	66.56	90.64
Os03t0387100-01	Rice	cytosol, plasma membrane	66.25	90.21
Zm00001d017336_P007	Maize	cytosol	66.88	89.17
Zm00001d017338_P006	Maize	cytosol	66.88	89.17
TraesCS3B01G319500.1	Wheat	cytosol	66.88	88.43
HORVU2Hr1G036390.6	Barley	plastid	64.38	76.3
Zm00001d017340_P002	Maize	cytosol	40.62	68.42
HORVU3Hr1G068630.1	Barley	mitochondrion	28.44	59.87
Zm00001d051211_P008	Maize	cytosol	66.56	45.32
CDY29009	Canola	cytosol	27.81	35.6
CDX90655	Canola	cytosol	27.81	35.6
CDX77988	Canola	cytosol, extracellular	27.81	35.6
CDX73737	Canola	cytosol, extracellular	27.81	35.6
CDY21248	Canola	cytosol	14.69	33.57
CDY33398	Canola	cytosol, extracellular	25.0	32.52
CDY18045	Canola	cytosol	25.0	32.52
CDY50408	Canola	cytosol, extracellular	24.69	32.38
CDY08208	Canola	peroxisome	24.69	32.38
CDY51800	Canola	peroxisome	24.69	31.6
CDX71518	Canola	cytosol	26.56	31.37
CDY37382	Canola	cytosol	19.69	31.34
CDY66240	Canola	extracellular	19.69	31.03
CDY02422	Canola	cytosol	26.25	31.0
CDY52371	Canola	cytosol	26.56	30.91
CDX93103	Canola	cytosol	25.31	30.8
CDX95156	Canola	cytosol	26.56	30.69
CDY47593	Canola	cytosol	25.94	30.4
CDY17035	Canola	cytosol	25.94	30.4
CDY48190	Canola	cytosol	23.44	30.12
CDY04473	Canola	cytosol	23.44	30.12
CDX77059	Canola	cytosol	23.44	30.12
CDX71476	Canola	cytosol	23.44	30.12
CDY25683	Canola	cytosol, plastid	25.62	28.98
CDY02493	Canola	mitochondrion	25.31	28.93
CDY69258	Canola	cytosol, mitochondrion	18.12	27.88
CDX81411	Canola	mitochondrion, plastid	23.44	26.5
CDY39501	Canola	cytosol, mitochondrion	16.56	26.37
CDY19309	Canola	extracellular	16.25	25.87

Protein Annotations

MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	GO:A0A078DDU6	EnsemblPlants:CDX87400	ProteinID:CDX87400	ProteinID:CDX87400.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005839	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00146374001
InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF16	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b
InterPro:Proteasome_subunit_alpha2	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0004EF0E27	SEG:seg	:

Description

BnaA07g34730D

Coordinates

chrLK031850:+:448718..451297

Molecular Weight (calculated)

35623.6 Da

IEP (calculated)

6.528

GRAVY (calculated)

-0.194

Length

320 amino acids

Sequence
(BLAST)

001: MESDHVMMMR TTATFRTRSC DDCVRVRAIT TSFNILSTNS FYKKSKAFNS HFLRLSLPSS LFDPYIEDDI IMQCCRFFEV SLKVQMGDSQ YSFSLTTFSP
101: SGKLVQIEHA LTAVGSGQTS LGIKASNGVV IATEKKLPSI LVDEASVQKI QNLTPNIGVV YSGMGPDFRV LVRKSRKQAE QYNRLYKEPI PVTQLVRETA
201: TVMQEFTQSG GVRPFGVSLL VAGYDDKGPQ LYQVDPSGSY FSWKASAMGK NVSNAKTFLE KRYTEDMELD DAIHTAILTL KEGFEGEISS KNIEIGKIGA
301: DKVFRVLTPA EIDDYLAEVE

Best Arabidopsis Sequence Match ( AT1G79210.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGTVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGTDKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB2Proteasome subunit alpha type-2-B [Source:UniProtKB/Swiss-Prot;Acc:Q8L4A7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.