CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015170.1-P	Field mustard	cytosol	99.59	98.78
CDY33398	Canola	cytosol, extracellular	99.59	98.78
CDY18045	Canola	cytosol	99.59	98.78
AT2G05840.1	Thale cress	cytosol	96.31	95.53
CDX93103	Canola	cytosol	98.77	91.64
Solyc12g009140.1.1	Tomato	extracellular	88.52	87.8
PGSC0003DMT400007520	Potato	cytosol, extracellular	88.52	87.8
KRH55422	Soybean	cytosol, endoplasmic reticulum	88.11	87.4
KRH26034	Soybean	nucleus	88.11	87.4
GSMUA_Achr10P...	Banana	cytosol	87.3	86.59
VIT_09s0002g00980.t01	Wine grape	cytosol	86.89	86.18
GSMUA_Achr6P11610_001	Banana	cytosol	85.25	84.55
Zm00001d027896_P001	Maize	cytosol, extracellular, mitochondrion	84.02	83.33
Zm00001d048271_P001	Maize	cytosol, extracellular	83.61	82.93
Os03t0180400-01	Rice	cytosol	83.61	82.93
EER92751	Sorghum	cytosol	83.2	82.52
TraesCS4D01G295500.1	Wheat	cytosol, golgi, plastid, unclear	82.79	82.11
TraesCS4A01G008300.1	Wheat	cytosol, golgi, plastid, unclear	82.79	82.11
HORVU4Hr1G076770.2	Barley	cytosol	83.2	71.99
GSMUA_Achr3P02110_001	Banana	cytosol	34.02	60.58
KXG36677	Sorghum	plastid	59.84	53.28
TraesCS2D01G177600.1	Wheat	mitochondrion	54.51	49.63
TraesCS2A01G170100.1	Wheat	mitochondrion	54.51	49.63
Os07t0614100-01	Rice	cytosol	49.18	47.43
TraesCS2B01G196400.1	Wheat	mitochondrion	53.28	44.67
Zm00001d022131_P001	Maize	mitochondrion	52.46	40.25
CDX79306	Canola	cytosol	32.79	34.04
CDX68003	Canola	cytosol, extracellular	32.38	33.62
CDY22253	Canola	cytosol	32.38	33.62
CDY26894	Canola	cytosol	32.38	33.62
CDY29009	Canola	cytosol	34.43	33.6
CDX73737	Canola	cytosol, extracellular	34.43	33.6
CDX77988	Canola	cytosol, extracellular	34.43	33.6
CDX90655	Canola	cytosol	34.43	33.6
CDY21248	Canola	cytosol	19.26	33.57
CDY66240	Canola	extracellular	24.59	29.56
CDY08208	Canola	peroxisome	29.51	29.51
CDY37382	Canola	cytosol	23.77	28.86
CDY69258	Canola	cytosol, mitochondrion	24.59	28.85
CDY51800	Canola	peroxisome	29.51	28.8
CDY19309	Canola	extracellular	22.95	27.86
CDY39501	Canola	cytosol, mitochondrion	22.95	27.86
CDY47593	Canola	cytosol	31.15	27.84
CDX71476	Canola	cytosol	28.28	27.71
CDY04473	Canola	cytosol	28.28	27.71
CDY48190	Canola	cytosol	28.28	27.71
CDX77059	Canola	cytosol	28.28	27.71
CDY02422	Canola	cytosol	30.74	27.68
CDY52371	Canola	cytosol	31.15	27.64
CDY17035	Canola	cytosol	30.74	27.47
CDX95156	Canola	cytosol	31.15	27.44
CDX71518	Canola	cytosol	30.33	27.31
CDX81411	Canola	mitochondrion, plastid	30.33	26.15
CDX88517	Canola	cytosol	32.38	25.73
CDY02493	Canola	mitochondrion	29.51	25.71
CDY25683	Canola	cytosol, plastid	29.51	25.44
CDX87400	Canola	extracellular	32.38	24.69

Protein Annotations

MapMan:19.2.6.1.1.1	Gene3D:3.60.20.10	GO:A0A078IN04	UniProt:A0A078IN04	EnsemblPlants:CDY50408	ProteinID:CDY50408
ProteinID:CDY50408.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00096646001
InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF11	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b
InterPro:Proteasome_subunit_alpha6	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0004EB5319	:	:

Description

BnaC03g45100DProteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A078IN04]

Coordinates

chrLK032907:-:42203..44223

Molecular Weight (calculated)

27173.4 Da

IEP (calculated)

5.405

GRAVY (calculated)

-0.300

Length

244 amino acids

Sequence
(BLAST)

001: MSRGSGGGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDESSVSHLF PVTKYLGLLA TGMTADSRSL VTQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLVAMVLG MDEERGPLLY KCDPAGHFYG HKATSAGMKE QEAINFLEKK MKENPAFTYD ETVQTAISAL
201: QSVLQEDFKA TEIEVGVVRA DNPIFRSLET EEIEEHLTAI SERD

Best Arabidopsis Sequence Match ( AT2G05840.1 )
(BLAST)

001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD

Arabidopsis Description

PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.