Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr7P03760_001 | |
| GSMUA_Achr9P20290_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G05840.1 | GSMUA_Achr7P03760_001 | AT5G40580.1 | 21798944 |
| AT2G05840.1 | GSMUA_Achr9P20290_001 | AT5G40580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 69.34 | 38.62 |
| GSMUA_Achr6P11610_001 | Banana | cytosol | 67.15 | 37.4 |
| VIT_09s0002g00980.t01 | Wine grape | cytosol | 64.96 | 36.18 |
| Os03t0180400-01 | Rice | cytosol | 64.96 | 36.18 |
| KRH55422 | Soybean | cytosol, endoplasmic reticulum | 64.96 | 36.18 |
| KRH26034 | Soybean | nucleus | 64.96 | 36.18 |
| Solyc12g009140.1.1 | Tomato | extracellular | 64.23 | 35.77 |
| PGSC0003DMT400007520 | Potato | cytosol, extracellular | 64.23 | 35.77 |
| Zm00001d027896_P001 | Maize | cytosol, extracellular, mitochondrion | 63.5 | 35.37 |
| EER92751 | Sorghum | cytosol | 63.5 | 35.37 |
| Zm00001d048271_P001 | Maize | cytosol, extracellular | 62.77 | 34.96 |
| TraesCS4D01G295500.1 | Wheat | cytosol, golgi, plastid, unclear | 62.77 | 34.96 |
| AT2G05840.1 | Thale cress | cytosol | 62.04 | 34.55 |
| Bra013157.1-P | Field mustard | cytosol | 61.31 | 34.15 |
| Bra015170.1-P | Field mustard | cytosol | 61.31 | 34.15 |
| TraesCS4A01G008300.1 | Wheat | cytosol, golgi, plastid, unclear | 61.31 | 34.15 |
| CDY18045 | Canola | cytosol | 61.31 | 34.15 |
| CDY33398 | Canola | cytosol, extracellular | 61.31 | 34.15 |
| CDY50408 | Canola | cytosol, extracellular | 60.58 | 34.02 |
| AT5G35590.1 | Thale cress | cytosol | 58.39 | 32.52 |
| CDX93103 | Canola | cytosol | 61.31 | 31.94 |
| HORVU4Hr1G076770.2 | Barley | cytosol | 62.04 | 30.14 |
| KXG36677 | Sorghum | plastid | 50.37 | 25.18 |
| TraesCS2D01G177600.1 | Wheat | mitochondrion | 43.8 | 22.39 |
| TraesCS2A01G170100.1 | Wheat | mitochondrion | 43.07 | 22.01 |
| Os07t0614100-01 | Rice | cytosol | 39.42 | 21.34 |
| TraesCS2B01G196400.1 | Wheat | mitochondrion | 42.34 | 19.93 |
| Zm00001d022131_P001 | Maize | mitochondrion | 37.23 | 16.04 |
| GSMUA_Achr2P03470_001 | Banana | cytosol | 24.82 | 13.65 |
| GSMUA_Achr8P13980_001 | Banana | cytosol | 23.36 | 13.62 |
| GSMUA_Achr5P19360_001 | Banana | cytosol | 23.36 | 13.62 |
| GSMUA_Achr11P... | Banana | cytosol | 24.09 | 13.25 |
| GSMUA_Achr7P21280_001 | Banana | cytosol | 21.9 | 13.1 |
| GSMUA_Achr4P00300_001 | Banana | cytosol | 24.82 | 12.73 |
| GSMUA_Achr10P... | Banana | cytosol | 24.09 | 12.45 |
| GSMUA_Achr4P10040_001 | Banana | cytosol | 22.63 | 12.45 |
| GSMUA_Achr8P23960_001 | Banana | cytosol | 22.63 | 12.45 |
| GSMUA_Achr10P... | Banana | peroxisome | 21.17 | 12.24 |
| GSMUA_Achr11P... | Banana | peroxisome | 21.17 | 12.24 |
| GSMUA_Achr6P02000_001 | Banana | cytosol | 14.6 | 10.31 |
| GSMUA_Achr6P10850_001 | Banana | mitochondrion | 19.71 | 8.85 |
Protein Annotations
| Gene3D:3.60.20.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004298 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005839 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0051603 | EnsemblPlantsGene:GSMUA_Achr3G02110_001 | EnsemblPlants:GSMUA_Achr3P02110_001 |
| EnsemblPlants:GSMUA_Achr3T02110_001 | InterPro:IPR029055 | UniProt:M0SB29 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PANTHER:PTHR11599 |
| PANTHER:PTHR11599:SF54 | InterPro:Proteasome_sua/b | SUPFAM:SSF56235 | UniParc:UPI0002951B39 | SEG:seg | : |
Description
Proteasome subunit alpha type-6 [Source:GMGC_GENE;Acc:GSMUA_Achr3G02110_001]
Coordinates
chr3:-:1405391..1410374
Molecular Weight (calculated)
15297.5 Da
IEP (calculated)
4.548
GRAVY (calculated)
0.046
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MTADARSLVQ QARNEAAEFR FKWGYEMPID VLATWYGRPL LAYYPYVPLV PLPVLGLRDA ALPLLSLAPG IYSILFQAAS AGLKEQEAID LLEKKMKNDP
101: AFSYEETVQT AISALQSVLQ KDFKATEIEV GVQDHCF
101: AFSYEETVQT AISALQSVLQ KDFKATEIEV GVQDHCF
001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD
Arabidopsis Description
PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.