Factsheet for GSMUA_Achr8P13980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P19360_001	Banana	cytosol	96.6	96.6
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	94.04	94.04
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	94.04	94.04
VIT_01s0011g01960.t01	Wine grape	cytosol	93.62	93.62
KRH13728	Soybean	cytosol	93.62	93.62
KRH65961	Soybean	cytosol	93.19	93.19
Solyc10g008010.2.1	Tomato	extracellular, plastid	92.34	92.34
PGSC0003DMT400027339	Potato	cytosol	91.91	91.91
EES05472	Sorghum	cytosol	91.06	91.06
CDY22253	Canola	cytosol	90.64	90.64
CDY26894	Canola	cytosol	90.64	90.64
AT1G16470.2	Thale cress	cytosol	90.64	90.64
CDX79306	Canola	cytosol	90.64	90.64
CDX68003	Canola	cytosol, extracellular	90.64	90.64
Bra035099.1-P	Field mustard	cytosol	90.64	90.64
Bra008402.1-P	Field mustard	cytosol	90.64	90.64
Os03t0387100-01	Rice	cytosol, plasma membrane	90.64	90.64
HORVU3Hr1G068660.1	Barley	cytosol	90.21	90.21
TraesCS3A01G285600.1	Wheat	cytosol	90.21	90.21
TraesCS2D01G198400.1	Wheat	cytosol	90.21	90.21
TraesCS2B01G217800.1	Wheat	cytosol	90.21	90.21
TraesCS2A01G189400.1	Wheat	cytosol	90.21	90.21
Os02t0634900-01	Rice	cytosol, plasma membrane	89.79	89.79
AT1G79210.1	Thale cress	cytosol	89.79	89.79
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	89.79	89.79
TraesCS3D01G285400.1	Wheat	cytosol	89.79	89.79
EER94765	Sorghum	cytosol	89.79	89.79
PGSC0003DMT400052657	Potato	cytosol	89.36	89.36
Zm00001d017336_P007	Maize	cytosol	91.06	89.17
Zm00001d017338_P006	Maize	cytosol	91.06	89.17
TraesCS3B01G319500.1	Wheat	cytosol	90.21	87.6
Bra003618.1-P	Field mustard	cytosol	90.64	86.94
HORVU2Hr1G036390.6	Barley	plastid	86.38	75.19
CDX88517	Canola	cytosol	90.64	69.38
Zm00001d017340_P002	Maize	cytosol	55.32	68.42
CDX87400	Canola	extracellular	90.64	66.56
HORVU3Hr1G068630.1	Barley	mitochondrion	37.87	58.55
Zm00001d051211_P008	Maize	cytosol	90.64	45.32
GSMUA_Achr11P...	Banana	cytosol	39.15	36.95
GSMUA_Achr2P03470_001	Banana	cytosol	38.3	36.14
GSMUA_Achr7P21280_001	Banana	cytosol	34.89	35.81
GSMUA_Achr10P...	Banana	cytosol	36.17	34.55
GSMUA_Achr11P...	Banana	peroxisome	34.04	33.76
GSMUA_Achr10P...	Banana	peroxisome	33.62	33.33
GSMUA_Achr6P11610_001	Banana	cytosol	34.47	32.93
GSMUA_Achr4P00300_001	Banana	cytosol	35.74	31.46
GSMUA_Achr10P...	Banana	cytosol	35.32	31.32
GSMUA_Achr8P23960_001	Banana	cytosol	31.91	30.12
GSMUA_Achr4P10040_001	Banana	cytosol	31.91	30.12
GSMUA_Achr6P02000_001	Banana	cytosol	21.7	26.29
GSMUA_Achr6P10850_001	Banana	mitochondrion	32.77	25.25
GSMUA_Achr3P02110_001	Banana	cytosol	13.62	23.36

Protein Annotations

MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
EnsemblPlantsGene:GSMUA_Achr8G13980_001	EnsemblPlants:GSMUA_Achr8P13980_001	EnsemblPlants:GSMUA_Achr8T13980_001	InterPro:IPR023332	InterPro:IPR029055	UniProt:M0TQA1
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599
PANTHER:PTHR11599:SF16	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha2	SMART:SM00948
SUPFAM:SSF56235	UniParc:UPI0002960CB2	:	:	:	:

Description

Proteasome subunit alpha type-2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G13980_001]

Coordinates

chr8:-:10643080..10653956

Molecular Weight (calculated)

25633.7 Da

IEP (calculated)

6.813

GRAVY (calculated)

-0.178

Length

235 amino acids

Sequence
(BLAST)

001: MGDSQYSFSL TTFSPTGKLV QIEHALTAVG SGQTSLGIKA ANGVVIATEK KLPSILVDET SVQKIQLMTT NIGVVYSGMG PDSRVLVRKS RKQAQQYFRL
101: YKEPIPVTQL VRETAAVMQE FTQSGGVRPF GVSLLVAGYD DNGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTD DMELDDAVHT AILTLKEGFQ
201: GQISGKNIEI GIVGADRKFR VLSPAEIHDY LAEVE

Best Arabidopsis Sequence Match ( AT1G16470.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.