CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 21107622
nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21107622 doi

N Ahsan, T Nakamura, S Komatsu

National Institute of Crop Science, 2-1-18 Kannondai, Tsukuba, 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13728	Soybean	cytosol	99.57	99.57
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	99.15	99.15
KRH65961	Soybean	cytosol	98.3	98.3
VIT_01s0011g01960.t01	Wine grape	cytosol	97.02	97.02
Bra008402.1-P	Field mustard	cytosol	94.47	94.47
Bra035099.1-P	Field mustard	cytosol	94.47	94.47
Solyc10g008010.2.1	Tomato	extracellular, plastid	94.47	94.47
CDY22253	Canola	cytosol	94.47	94.47
CDY26894	Canola	cytosol	94.47	94.47
AT1G16470.2	Thale cress	cytosol	94.47	94.47
CDX68003	Canola	cytosol, extracellular	94.04	94.04
CDX79306	Canola	cytosol	94.04	94.04
PGSC0003DMT400027339	Potato	cytosol	94.04	94.04
GSMUA_Achr5P19360_001	Banana	cytosol	94.04	94.04
GSMUA_Achr8P13980_001	Banana	cytosol	94.04	94.04
AT1G79210.1	Thale cress	cytosol	93.62	93.62
PGSC0003DMT400052657	Potato	cytosol	93.19	93.19
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	93.19	93.19
HORVU3Hr1G068660.1	Barley	cytosol	91.06	91.06
TraesCS2A01G189400.1	Wheat	cytosol	91.06	91.06
TraesCS2B01G217800.1	Wheat	cytosol	91.06	91.06
TraesCS2D01G198400.1	Wheat	cytosol	91.06	91.06
TraesCS3A01G285600.1	Wheat	cytosol	91.06	91.06
EES05472	Sorghum	cytosol	91.06	91.06
TraesCS3D01G285400.1	Wheat	cytosol	90.64	90.64
Os03t0387100-01	Rice	cytosol, plasma membrane	90.64	90.64
Os02t0634900-01	Rice	cytosol, plasma membrane	90.64	90.64
EER94765	Sorghum	cytosol	90.21	90.21
Bra003618.1-P	Field mustard	cytosol	94.04	90.2
Zm00001d017336_P007	Maize	cytosol	91.06	89.17
Zm00001d017338_P006	Maize	cytosol	91.06	89.17
TraesCS3B01G319500.1	Wheat	cytosol	91.06	88.43
HORVU2Hr1G036390.6	Barley	plastid	87.23	75.93
CDX88517	Canola	cytosol	94.47	72.31
CDX87400	Canola	extracellular	94.47	69.38
Zm00001d017340_P002	Maize	cytosol	54.89	67.89
HORVU3Hr1G068630.1	Barley	mitochondrion	38.3	59.21
Zm00001d051211_P008	Maize	cytosol	90.64	45.32
KRH69759	Soybean	endoplasmic reticulum, nucleus	39.15	36.95
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	39.15	36.95
KRH55422	Soybean	cytosol, endoplasmic reticulum	36.17	34.55
KRH26034	Soybean	nucleus	36.17	34.55
KRH76017	Soybean	cytosol	36.17	34.0
KRH65617	Soybean	nucleus	36.17	34.0
KRH00322	Soybean	cytosol	36.17	34.0
KRH49455	Soybean	endoplasmic reticulum, nucleus	36.17	34.0
KRG90710	Soybean	peroxisome	33.62	33.33
KRH36037	Soybean	endoplasmic reticulum, nucleus	33.62	33.33
KRH69234	Soybean	endoplasmic reticulum	33.62	33.33
KRH31817	Soybean	cytosol	33.19	32.91
KRG94269	Soybean	cytosol	32.77	30.92
KRH57704	Soybean	cytosol, endoplasmic reticulum	32.34	29.12
KRH05846	Soybean	cytosol, nucleus	34.47	28.52
KRH38836	Soybean	cytosol, nucleus	34.04	28.07
KRH15173	Soybean	cytosol, nucleus	34.04	27.78
KRH20407	Soybean	cytosol	14.47	22.22
KRH57899	Soybean	cytosol	14.47	22.22

Protein Annotations

EntrezGene:100799108	MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	EMBL:ACUP02004886	EMBL:BT096975	UniProt:C6TH59
EnsemblPlantsGene:GLYMA_08G167600	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332
InterPro:IPR029055	ProteinID:KRH43726.1	ProteinID:KRH43727.1	EnsemblPlants:KRH43728	ProteinID:KRH43728	ProteinID:KRH43728.1
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599
PANTHER:PTHR11599:SF16	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha2	SMART:SM00948
SUPFAM:SSF56235	MEROPS:T01.972	UniParc:UPI0001B16E9B	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:13209262..13216901

Molecular Weight (calculated)

25579.6 Da

IEP (calculated)

5.370

GRAVY (calculated)

-0.133

Length

235 amino acids

Sequence
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA ANGVVIATEK KLPSILVDEA SVQKIQLLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYHRL
101: YKEPIPVTQL VREVAAVMQE FTQSGGVRPF GVSLLVAGFD DNGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTD DMELDDAVHT AILTLKEGFE
201: GQISGKNIEI GIIGADKKFR VLTPAEIDDY LAEVE

Best Arabidopsis Sequence Match ( AT1G16470.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.