Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH05846 | Soybean | cytosol, nucleus | 86.27 | 46.48 |
| KRH38836 | Soybean | cytosol, nucleus | 84.97 | 45.61 |
| KRH15173 | Soybean | cytosol, nucleus | 85.62 | 45.49 |
| VIT_18s0001g12760.t01 | Wine grape | cytosol | 72.55 | 39.08 |
| AT1G47250.1 | Thale cress | cytosol | 70.59 | 38.99 |
| PGSC0003DMT400009588 | Potato | cytosol | 69.28 | 38.69 |
| CDY17035 | Canola | cytosol | 68.63 | 38.46 |
| CDX71518 | Canola | cytosol | 67.97 | 38.38 |
| CDY02422 | Canola | cytosol | 67.97 | 38.38 |
| Bra035332.1-P | Field mustard | cytosol | 67.97 | 38.38 |
| CDX95156 | Canola | cytosol | 69.28 | 38.27 |
| CDY52371 | Canola | cytosol | 68.63 | 38.18 |
| Bra014068.1-P | Field mustard | cytosol | 67.32 | 38.15 |
| Bra027456.1-P | Field mustard | cytosol | 67.97 | 37.82 |
| CDY47593 | Canola | cytosol | 67.32 | 37.73 |
| AT5G42790.1 | Thale cress | cytosol | 67.97 | 37.41 |
| PGSC0003DMT400039976 | Potato | cytosol | 66.01 | 37.0 |
| Solyc04g080590.2.1 | Tomato | extracellular | 69.93 | 36.15 |
| GSMUA_Achr10P... | Banana | cytosol | 58.17 | 33.58 |
| TraesCS6A01G097800.1 | Wheat | unclear | 62.75 | 33.33 |
| TraesCS6D01G084800.1 | Wheat | golgi | 62.75 | 33.33 |
| Os02t0133800-01 | Rice | plastid | 58.82 | 33.33 |
| TraesCS6B01G126000.1 | Wheat | cytosol | 62.75 | 33.22 |
| HORVU6Hr1G017500.1 | Barley | cytosol | 62.09 | 32.99 |
| Zm00001d015180_P001 | Maize | extracellular, mitochondrion, plasma membrane | 58.17 | 32.48 |
| EES04466 | Sorghum | cytosol | 56.86 | 32.22 |
| KRH00322 | Soybean | cytosol | 24.18 | 14.8 |
| KRH43728 | Soybean | cytosol, endoplasmic reticulum, nucleus | 22.22 | 14.47 |
| KRH13728 | Soybean | cytosol | 22.22 | 14.47 |
| KRH65961 | Soybean | cytosol | 22.22 | 14.47 |
| KRH49455 | Soybean | endoplasmic reticulum, nucleus | 23.53 | 14.4 |
| KRH75739 | Soybean | cytosol, endoplasmic reticulum, nucleus | 21.57 | 14.04 |
| KRH69234 | Soybean | endoplasmic reticulum | 21.57 | 13.92 |
| KRH26034 | Soybean | nucleus | 22.22 | 13.82 |
| KRH69759 | Soybean | endoplasmic reticulum, nucleus | 22.22 | 13.65 |
| KRH65617 | Soybean | nucleus | 22.22 | 13.6 |
| KRH76017 | Soybean | cytosol | 22.22 | 13.6 |
| KRH31817 | Soybean | cytosol | 20.91 | 13.5 |
| KRH55422 | Soybean | cytosol, endoplasmic reticulum | 21.57 | 13.41 |
| KRH36037 | Soybean | endoplasmic reticulum, nucleus | 20.26 | 13.08 |
| KRG90710 | Soybean | peroxisome | 20.26 | 13.08 |
| KRH08047 | Soybean | cytosol, endoplasmic reticulum, nucleus | 20.91 | 12.85 |
| KRG94269 | Soybean | cytosol | 18.95 | 11.65 |
| KRH57704 | Soybean | cytosol, endoplasmic reticulum | 16.99 | 9.96 |
| CDY21248 | Canola | cytosol | 5.23 | 5.71 |
| KRH57899 | Soybean | cytosol | 5.23 | 5.23 |
Protein Annotations
| Gene3D:3.60.20.10 | MapMan:35.1 | UniProt:A0A0R0GQN2 | EMBL:ACUP02008262 | EnsemblPlantsGene:GLYMA_13G176700 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005839 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0019773 | GO:GO:0051603 | InterPro:IPR029055 | EnsemblPlants:KRH20407 | ProteinID:KRH20407 | ProteinID:KRH20407.1 |
| InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF12 | InterPro:Proteasome_alpha1 | InterPro:Proteasome_sua/b |
| SUPFAM:SSF56235 | UniParc:UPI0006EDB9E8 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr13:-:29086366..29086845
Molecular Weight (calculated)
16539.1 Da
IEP (calculated)
4.012
GRAVY (calculated)
-0.249
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: VCTQQSWKHP YGVGHLVAGL DESGAHLYYN CPSGNYFEYQ AFAIGSRSQA AKTYLERKFE NFVGSSLEDL IKDALIATRE SLSAVCTIAV VGVGEPFHIL
101: DQETVQQLID TFEIVREEEA APAEEEAQPA AEQDAPTDQG AAAVDQGGSP MDI
101: DQETVQQLID TFEIVREEEA APAEEEAQPA AEQDAPTDQG AAAVDQGGSP MDI
001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM
Arabidopsis Description
PAF1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178UFX8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.